Query= MSMg01no169_m13.b1 MSMg01no169_m13.b1 CHROMAT_FILE:
MSMg01no169_m13.b1 PHD_FILE: MSMg01no169_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:34 2005
(310 letters)
>mm_chr5_54053784_54054495
Length = 712
Score = 543 bits (281), Expect = e-159
Identities = 300/307 (97%), Gaps = 4/307 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgctttttggctcaccagtcatctacaacctactctaagaaggtccttgtcat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattctgctttttggctcaccagtcatctacaacctactctaagaaggtccttgtcat 322
Query: 64 ctgctgccatctagatagccagttactgtgagaagaggaaccaggctgcaagggggtgga 123
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ctgctgccatctagatagccagttactgtgagaagaggaaccaggctgcaggggggtgg- 263
Query: 124 gggt--ggc-atcctgtccagccccaattccaacttcaccctgcatcagacagctatgct 180
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggtggggcaatcctgtccagccccaattccaacttcaccctgcatcagacagctatgct 203
Query: 181 gttctggctagttctatgtcaatttgacataagtgtaagtcattttggaggaagaaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gttctggctagttctatgtcaatttgacataagtgtaagtcattttggaggaagaaactt 143
Query: 241 caactaagaaaacacttccaagaggaattctgtagggcattgtaagcagtgattgacagc 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 142 caactaagaaaacacttccaagaggaagcctgtagggcattgtaagcagtgattgacagc 83
Query: 301 agaggaa 307
|||||||
Sbjct: 82 agaggaa 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 712
Length adjustment: 9
Effective length of query: 301
Effective length of database: 703
Effective search space: 211603
Effective search space used: 211603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no169_m13.g1 MSMg01no169_m13.g1 CHROMAT_FILE:
MSMg01no169_m13.g1 PHD_FILE: MSMg01no169_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:34 2005
(589 letters)
>mm_chr5_53895913_53896901
Length = 989
Score = 951 bits (492), Expect = 0.0
Identities = 574/622 (92%), Gaps = 33/622 (5%)
Strand = Plus / Plus
Query: 1 acatggagaacattgtgtgaaggtgagggcagaggtggcgacggagcagaagtcagggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatggagaacattgtgtgaaggtgagggcagaggtggcgacggagcagaagtcagggat 260
Query: 61 ttacacagattgcaagcaagcgaacatcagaatctaggagaagcacatgaaactcatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacacagattgcaagcaagcgaacatcagaatctaggagaagcacatgaaactcatctg 320
Query: 121 cccctcaccatcccgagtgggctaaccctgcccttactgtagacttagacttctagtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccctcaccatcccgagtgggctaaccctgcccttactgtagacttagacttctagtcac 380
Query: 181 ccctcctgtgcactctaccaaactaatgcatacctttgtttcagcttccaggtggtcagt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctcctgtgcactctagcaaactaatgcatacctttgtttcagcttccaggtggtcagt 440
Query: 241 ggtatctgaaggtaatctcttgtcttctattctattctctctctctctttatcccccccc 300
|| | |||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 441 gggaagtgaaaataatctcttgtcttctattctattctctctctctccatatccccatct 500
Query: 301 ccccccctttttgtgagactgagtctcacctagagctggttggcctcaaactgagactac 360
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctctctttttgtgagactgagtctcacctagagctggttggcctcaaactgagactac 560
Query: 361 atattcaagaatgatgttgaaattctggtgatcttgtctcctaagtggtagcattgcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 atattcaagaatgatgttgaaattctggtgatcttgtctcctaagtggtaggattgcagg 620
Query: 421 tgtatcagttgccatgataaaaaaa-----------------------aaaaaaca---- 453
||||||||||||||||||||||||| ||||||||
Sbjct: 621 tgtatcagttgccatgataaaaaaacaaacaaacaaacaaacaaaaacaaaaaacaaaaa 680
Query: 454 ------ccaccaaagtaacttatagaagaaaaaggatatttggactgaaggttccagaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaccaccaccaaagtaacttatagaagaaaaaggatatttggactgaaggttccagaaa 740
Query: 508 gattaggcttcatcttaggagggaggcatggcaacaggagtgataccaagagcatggagc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattaggcttcatcttaggagggaggcatggcaacaggagtgataccaagagcatggagc 800
Query: 568 ccaaagctcacatcttaaacac 589
||||||||||||||||||||||
Sbjct: 801 ccaaagctcacatcttaaacac 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
