BAC Information

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BAC

Clone NameMSMg01-169M19
Chromosome5 (Build37)
Map Location 4,142,773 - 4,143,022
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51
Downstream geneENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169M19.T7 (MSMg01no169_m19.b1)MSMg01-169M19.TJ (MSMg01no169_m19.g1)
ACCAG366559AG366560
length672796
length of high quality
(start - end)
266 (45 - 310)32 (161 - 192)
definitionCHROMAT_FILE: MSMg01no169_m19.b1 PHD_FILE: MSMg01no169_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:35 2005CHROMAT_FILE: MSMg01no169_m19.g1 PHD_FILE: MSMg01no169_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGC
ATTCATTGTATGCATGATTAGAGGTTATCGGTTGGTTTTGATACAGGAAG
TGATGTAATATCATTCATCTATTTGAAGGGTCCCTCTAGCTGCATCTCTG
AGAATAGAGAAGTGGGATGAAGGGATGGCATTTTAAAAAGATCAAAATAC
CTGCAAGGTGACTAGCTCAGACATTCAAAATTGTCATAAGATGTGGTGAC
CACAAAAGCTGGTATAGACACCACCATCACACCAGTTCATTAAAAAAAAA
AAAAACTGATGTTTTTTATGATGACTTGTACTCAAGTTATAAAAGATTTC
TGAGATACNTATCACNGANTCTANACCGACTTGNTGATGCACTGATTGTA
GAAGGTGAAGAATCAAGNNTACNGAAAGAGCTCTTTGGCTTAAGCACCTG
TATGGATGGTGACATTGAGAGTGATAATGTAATAAGATGAGAAGTCTCCA
TGGAGAAAACATTTGTTTTTAGTCTTTTAAAAATCATTTTTTATTATTGT
TGTCATTATTTATTTACTGTAACCCCAATAGCATCTCTGCTCCCTCTTTT
TCTCCCAGGCCCACCTTACAAATCCATCCCACTGTTACACTCTTCCATTC
TCCTCAAGGAATGGAAAGACCC
AAAAAAAAATAAAGAAAACAGGGAAAGGGGTGAAAAACACAAAAAANNCC
ACAATGATATGCGTAGGCCTGGTGGCCGACTGAACAACAAATTTCGGTGA
ACTATAGATGGGTCCACAAAATTCTGAGGTACAAGACTTCTGTGTTAATA
TGGTGAATCCATCTCTGCTAACGTTTTATTTCCAGGGTGTGGGGGCTGGA
AACTTGTTGGAAAGAGCTGCAAACAGTGGCAAAAAAACTAGCAGAAGAAA
TCGGGAAACAGCTGAATAAACAAAAACCTTTGCTCGGGAGGGGTTGAAAA
AAAACTTACAAAAAGTGAACTTGGTTGAAATTGCCCAGTTCTTAGAAACA
GAGATTTAGGTCTAGTCTCCTTTTCTACCATATACAAGCCTGTCATGGAA
TCAACCTACGTTTTTTTTTTAACCCCCCCACACCCCCCCAGTGAAACATT
TCGGATTCTTGAGGTGTTTCTGAGAAACCTACAATAACAGCTCTAGCCGG
GAGTATGGCGGGTAGAGAACCTGGATGCACATCGGACATGCAATCCTTTT
GGACCAATCATTTGCCAAAATTACAAGATGGGGAAATCCTCCACAAATAG
GTAAAACGCTAAAAAGGAAAATTCTGATAACAACATAAGGTCCACACTTA
AATTTTTGGGACCGAGGGCAAAAATGAAAGAAAGCCAAACGCTAGGGGCA
AAAGACTCACAAAAAAAAGGGGGAAAAAATAGACAAAAAGTGTCGGACGA
CAAATTACCCAGACAAACGCTATATGAAATTAATTTGTTGAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_m19.b1 MSMg01no169_m19.b1 CHROMAT_FILE:
MSMg01no169_m19.b1 PHD_FILE: MSMg01no169_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:35 2005
         (266 letters)



>mm_chr5_4142567_4143232
          Length = 666

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcattgtatgcatgattagaggttatcggttggttttgatacaggaagtgatgtaata 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcattgtatgcatgattagaggttatcggttggttttgatacaggaagtgatgtaata 266

                                                                       
Query: 67  tcattcatctatttgaagggtccctctagctgcatctctgagaatagagaagtgggatga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcattcatctatttgaagggtccctctagctgcatctctgagaatagagaagtgggatga 326

                                                                       
Query: 127 agggatggcattttaaaaagatcaaaatacctgcaaggtgactagctcagacattcaaaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agggatggcattttaaaaagatcaaaatacctgcaaggtgactagctcagacattcaaaa 386

                                                                       
Query: 187 ttgtcataagatgtggtgaccacaaaagctggtatagacaccaccatcacaccagttcat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgtcataagatgtggtgaccacaaaagctggtatagacaccaccatcacaccagttcat 446

                     
Query: 247 taaaaaaaaa 256
           ||||||||||
Sbjct: 447 taaaaaaaaa 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)