BAC Information

Click to search

BAC

Clone NameMSMg01-169O06
Chromosome5 (Build37)
Map Location 143,527,208 - 143,527,509
singlet/doubletsinglet
Overlap geneZfp469
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888
Downstream geneLOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O06.T7 (MSMg01no169_o06.b1)MSMg01-169O06.TJ (MSMg01no169_o06.g1)
ACCAG366625AG366626
length803780
length of high quality
(start - end)
302 (106 - 407)282 (137 - 418)
definitionCHROMAT_FILE: MSMg01no169_o06.b1 PHD_FILE: MSMg01no169_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:42 2005CHROMAT_FILE: MSMg01no169_o06.g1 PHD_FILE: MSMg01no169_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAAATCCTCTTCGAAACGTTTCTCCCCACATTTCAGNGGGNNNNNNGGA
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAAGTAGCATCGCCTGGCCTGGAACTCTCATATCCTCCTGTCT
TAGCCTTGCACTTGCTGTTGCCTCATGCCAATCTTGCCGAGTGGCACCCA
CACTTAATATGACACGACTAAACACTACCCAGAAGTAATGGTCTAATGAG
ATAAATAACAAGTGCGTTATTTACACACACAGGTTCGAAGTCTGTCCTTC
GAGCTACCTGAGACCACAAAGGCAGAAAAGGGTAGTCCCAGGCCTCATTT
CCATTATGCTTTCATGCTGATCCATTTTACAGTACCCACAGGACAGGCCT
GACACCGAGNGATATCGATAGTTTACCCTAGACAGGGCCCATGANCGANT
GAGGGTCATATATTAAAAAGGTGAGAAGGTAAATAAAAAAAAAGATCCTG
GCCATCTGCCTCTGCCTCTCAGGCCTCCGGGAGGAAGGGAGGATAAGGGA
TCACCCGCTCTTCCTTCTTCTGGATACAGCTACATTTCTTTGTTGGAGGT
CACTTCACGCCGTAAATCGCTACGTTCTTGAGCCCTTTCTGAAAAGGTAT
TCTCCTAAATCCTTCTCCTCGACATGAGAAATGCCTGGAATGTCATAAAG
GCTTTCCCCCAGGTTATTTCCGCACCCCCCCACGCTTTTGGTTTCCTGGG
TATCTTGCGGCAACTGTTACACGCATGTTCTATGGAATATTTCACCTTGC
TGG
CCCCCTTTTTTTCCCTCTCTTCGTTCATTTTCTTTTTTTTCCTATTTTTA
TTTNNNNTTCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCTGCCT
GCCTCTGCCTCCTAAGACCTAGGACTCAAGGCCCGTCCTGCTCAGCCATG
CAGCCTGCTGGGACATCTTGTTGGCTGCTTCTGTCTGAGCTGTTCTAGCT
AATAGGCCACATCAGGTCTCCAAACAGTATTATTCCAGAAGATTCTTCGG
CATCCTCCAGCTCTTACATTTTTTTCCCTTCTCTTTTCTGGTATGTTCTC
TGACTTTTAGAAGGTGGGATGAGTCATGCTTTGGTGGCGCATGCCTTTAA
TCCCAGCATTTGGGATTTTTGTTTTCCCCCGGATCTNCCACTTTGAGGCC
AGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAACTGAACAGAAACCCT
GTCGCGAAAAACAAAAAACATCTACTACCAAAAAGAAGGTGGGGTGGGAA
TTTGATAACCATGTCTCATCTTTAAAAACACCTTACTATTTATTTTTATT
CTGCGTGCCCTGCAATTCCGCCTCCCTGTATGTATTGCGCGATTTTGTCA
ATGTCCTCCTGGAATTTGAAATCTCCACTCCCCCCATATTTTCTACCGCC
CGGGATTCTCATCCCCAAAACCCCTTTGGAAGTACATATCTAAGACGACA
TTTAACCCTTCTTTAATTATTCTTCTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o06.b1 MSMg01no169_o06.b1 CHROMAT_FILE:
MSMg01no169_o06.b1 PHD_FILE: MSMg01no169_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:42 2005
         (302 letters)



>mm_chr5_143527008_143527709
          Length = 702

 Score =  522 bits (270), Expect = e-153
 Identities = 294/302 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagtagcatcgcctggcctggaactctcatatcctcctgtcttagccttgcacttgc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagtagcatcacctggcctggaactctcatatcctcctgtcttagccttgcacttgc 260

                                                                       
Query: 61  tgttgcctcatgccaatcttgccgagtggcacccacacttaatatgacacgactaaacac 120
           |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tgttgcctaatgccaaccttgccgagtggcacccacacttaagatgacacgactaaacac 320

                                                                       
Query: 121 tacccagaagtaatggtctaatgagataaataacaagtgcgttatttacacacacaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccagaagtaatggtctaatgagataaataacaagtgcgttatttacacacacaggtt 380

                                                                       
Query: 181 cgaagtctgtccttcgagctacctgagaccacaaaggcagaaaagggtagtcccaggcct 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaagtctgtccttcaagctacctgagaccacaaaggcagaaaagggtagtcccaggcct 440

                                                                       
Query: 241 catttccattatgctttcatgctgatccattttacagtacccacaggacaggcctgacac 300
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 441 catttccattatgctttcatgctgatccatcacacagtacccacaggacaggcctgacac 500

             
Query: 301 cg 302
           ||
Sbjct: 501 cg 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)