BAC Information

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BAC

Clone NameMSMg01-170M16
Chromosome5 (Build37)
Map Location 16,162,514 - 16,162,637
singlet/doubletsinglet
Overlap genenone
Upstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M16.T7 (MSMg01no170_m16.b1)MSMg01-170M16.TJ (MSMg01no170_m16.g1)
ACCAG367245AG367246
length796796
length of high quality
(start - end)
131 (186 - 316)---
definitionCHROMAT_FILE: MSMg01no170_m16.b1 PHD_FILE: MSMg01no170_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:50 2005CHROMAT_FILE: MSMg01no170_m16.g1 PHD_FILE: MSMg01no170_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGATATAGACGCTGTAGACGAATGTCAGCCTTACTTTTTCTGAAC
TTCCCACTTCCAGTCTCTGAATTATCATGATCTCTGTAGCTATTAAGTGT
ATTAGTGCCTTCATGATGCTGTTGACATAGGAAACATATTGCAAATAAAC
AAACAATTGCAGGGCAATTTTGTGCAACTGAATTGATTCATTAGCTTTCT
CATAGTTCTTCCAAACAGTTAAAAGAAGTTTGAATAGAACAAGATACATT
TGGTAGTTATGGCACAAGTTCTTTTTTAAACTAAAATTGCATCTGAAAGT
ATCACAAATTTTGNATGNNTTTCCCCAAAACAANAACCCANTGAGAAGNN
GANNGAAANAANNNNGGGGGCCCCACCAAAAAAAAAAAAAAAAAGCCTGC
GGGGGGTGGCTCTTCCCTCCTTTTCCTCCCCTTAATTCCTTCCCCCTTTT
TTTTTTTCCCTTTTTCTCCTTCCTTCTTTCCTTTTCCTTTTTCCTTTCCC
TCCCCCCTTTCTTTCCCTTTTCTTTCCCCTCCCTTCCCTCCTTTTTCCCC
TTTTCTCCCTCTTTTTTCATCTCCATCCCCTCTCCCCCTTTATATTTATT
TCCTCCTCTTCTCCTTTTTACCCCCTCCCACCTCTTATCTTTTTCCCGAT
TACTTTTCTTCCCCCCCTTTTCCCCTTCTCTTCCCCCCTCACCCATTCTT
ATTTTTTCTCTTCTTTCCCCCCCCCTTTCTCTTTTTTCCTCTCCCT
NCTGCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCGGATATAAGTCCTATATCCCA
CCGATTTAATTAATCTCTCAAAACATTGTATTTTGAAACTATCACCCGCT
GGTTCTTCTCATGCCCCTTCAAATAGGAGACTGGCCCTAACTATTTCCCG
CTGACCCACTACCCATTCCTCTTGCACCCCCTCCCCCACCTTATCCACCT
GTTTTCCCCCCCCAACTCCCCCCCCCTTAATATCCCCCCCCCCCCCCCCA
TACCCCCACAACTCCTTTTTTTTTTCCCCTTTTCTCTCCCTCCCCCCCCC
ACCCTTTCGATGGGTTCCCCACCCCCCCCCCTGTTCCTCTCTTTTTTATA
TAGCCGGGGCTTTCTCCCCAAAAAAAAAAAAAAAACCCCTCCGCGGTGGC
CGCCCCTTCCCCCCTCCCCTCTCTTTCCTCCTCCTCTCCCCCTTCTCCCC
CCCTCCCCCCCCCCTTTTTTTCTCCTTCCCCCCCCCCCCCCCTTTTTCCC
CCCCCTCTCCCCTCCCCTCCCCCACCCCCCCTCACCCTTTTTCTTTCTTT
CTTCTCCCCCTTGTCACCCCCCTCCCTCCCTCTCAACCCCACCTCTTTTT
TTCTCTCCTTTTTCTTCTCCCCCACCCTCCCCCCCCCCCTCCCCCATTTA
TTTTCCACCCCCCCCCGTTCTTCTTCTTCCCACCCACTCCTTTCTCTCCC
TCCCCTCCCCCCCCCCTCTTCTGCCCACCTCCTTTCTTTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m16.b1 MSMg01no170_m16.b1 CHROMAT_FILE:
MSMg01no170_m16.b1 PHD_FILE: MSMg01no170_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:50 2005
         (131 letters)



>mm_chr5_16162314_16162841
          Length = 528

 Score =  217 bits (112), Expect = 3e-61
 Identities = 123/128 (96%), Gaps = 5/128 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgcaaataaacaaacaattgcagggcaattttgtgcaactgaattgattcattagc 60
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgcaaataaac--ac--ttgcagggcaattttgtgcaactgaattgattcattagc 256

                                                                       
Query: 61  tttctcatagttcttccaaacagttaaaa-gaagtttgaatagaacaagatacatttggt 119
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 257 tttctcatagttcttccaaacagttaaaaagaagtttgaatagaacaagatacatttggt 316

                   
Query: 120 agttatgg 127
           ||||||||
Sbjct: 317 agttatgg 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 528
Length adjustment: 8
Effective length of query: 123
Effective length of database: 520
Effective search space:    63960
Effective search space used:    63960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)