Query= MSMg01no170_m23.b1 MSMg01no170_m23.b1 CHROMAT_FILE:
MSMg01no170_m23.b1 PHD_FILE: MSMg01no170_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:52 2005
(321 letters)
>mm_chr5_13586826_13587546
Length = 721
Score = 584 bits (302), Expect = e-171
Identities = 314/318 (98%), Gaps = 2/318 (0%)
Strand = Plus / Minus
Query: 5 gaattcattcacaaagactttactgtttatagctaaacaattctgcgtagctaattttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcattcacaaagactttactgtttatagctaaacaattctgcgtagctaattttca 462
Query: 65 taggcttaaaccaatataatgccaccaaattatatcttcaaaataggcaacattatctca 124
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagacttaaaccaatat-atgccaccaaattatatcttcaaaataggcaacattatctca 403
Query: 125 cgtaaaaccattaaatgaacaacaat-attgaagcacaatctcacttttaaaaagtcctt 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 cgtaaaaccattaaatgaacaacaataattgaagcacaatctcacttttaaaaagtcctt 343
Query: 184 ggtcagttttcccatttgtatatgagacatttctatccatggtagatattattttgatat 243
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggtcagttttaccatttgtatatgagacatttctatccatggtagatattattttgatat 283
Query: 244 agtataagaactttcctacaaagggactagattgctaaacaaatagaagcatcaccaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtataagaactttcctacaaagggactagattgctaaacaaatagaagcatcaccaaga 223
Query: 304 tgatgcattcttagaata 321
||||||||||||||||||
Sbjct: 222 tgatgcattcttagaata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no170_m23.g1 MSMg01no170_m23.g1 CHROMAT_FILE:
MSMg01no170_m23.g1 PHD_FILE: MSMg01no170_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:52 2005
(320 letters)
>mm_chr5_13460476_13461195
Length = 720
Score = 551 bits (285), Expect = e-161
Identities = 312/321 (97%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 1 ttactaaaaacctggagaatggatcacttttaaagtagccaagagagagctttagttctg 60
|||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttactataaacctggagaacggatcacttttaaagtagccaagagagtgctttagttctg 260
Query: 61 tgtcagaaattgcatcctcatccagaggtaaccacatgtcatgatgttgaacctgcatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagaaattgcatcctcatccagaggtaaccacatgtcatgatgttgaacctgcatag 320
Query: 121 ttcctgcctctggctataacctcatctggggaagtaaccacctccctattctcttgtggg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctgcctctggctataacctcatttggggaagtaaccacctccctattctcttgtggg 380
Query: 181 aagatccaacccatcattactctgtgccaatacacaacaaacatttattaatagcaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagatccaacccatcattactctgtgccaatacacaacaaacatttattaatagcaacta 440
Query: 241 ttgcagagtgaaagctgtgttaaagaggcaatcagtccctctcccccctc-ctcgctctc 299
|||||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 441 ttgcagagtgaaggctgtggtaaagaggcaatcagtccctctcccccctctctcactctc 500
Query: 300 tctctctctctctctctctct 320
||||||||||||||| |||||
Sbjct: 501 tctctctctctctctgtctct 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
