BAC Information

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BAC

Clone NameMSMg01-172J01
Chromosome5 (Build37)
Map Location 86,000,697 - 86,000,886
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172J01.T7 (MSMg01no172_j01.b1)MSMg01-172J01.TJ (MSMg01no172_j01.g1)
ACCAG368437AG368438
length714712
length of high quality
(start - end)
190 (128 - 317)573 (77 - 649)
definitionCHROMAT_FILE: MSMg01no172_j01.b1 PHD_FILE: MSMg01no172_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:03 2005CHROMAT_FILE: MSMg01no172_j01.g1 PHD_FILE: MSMg01no172_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGNGACGCGGCGCGGA
ANTCCTATCACTTTCGCAGCAAAGCACACATGNTACATGCCCTTCAGCAT
AAAAATATTAGAAATTTTTTTCCGAGGAGTGATCAGTTAATCCGAAGAGT
GTCAATCATGCCTGTTTCACAGATAGTTACATGATGTTTCTACTGTCACT
TGTTGAATAGATTTATGGAATTTTAGCTGCATACTTTTAGAAAAATGAAA
CTCCTTGTTTGCCAGGAAAACTGATCTGCCCCTAACTGGCTGGCTGTAGG
TGTAAGTGAATTTGAGAGTTTGCTAATTTTAAGGGACTCAAGGACTAGAC
CAGCTTGTTTTTTTTTTCCCACCCCACCCCAATGTCAGAACAGTAGGGAC
TCTCTCTGCACCTGCACAGGATGAACAAAAAATTAATGATTATCTGTGAG
AACAGACAACAAGGAAAATCTACTCTGCTCAGAAGTTCGCAGTGTGGATT
AGCTTCATTGGCATCTAATGTCTGAGTGCCATTGAGCTGATCTTTTTTTT
TTTGTACCTTCTGGCTCCTGCCTCAGGATGTCCGATTCGCTTTGTTTATC
TAGCGTTTTATCTAATTTTGGCACAATTCATCCCACCCATTTTTTCACTC
GCCCCCATTGTCTATGTCTATTTTGCCTATATCATAGGGAATTCAACCCT
TAACTTCACGCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAATATAAAACTTTTGAAGAC
AGGAGGATTACTATATGTTCCTTGCCATAAGAAATAGTGTGCCCTTCCGC
TCCACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTCGCCCAAAACCCG
CAAGGGCCCACACAGGACTCCCCACGGGATCCTAAGACCCCTGGTGAGCG
GAACACAGCACCTGCCCTAATCCAAACACGCGGAACCTGAGACTGCAGTA
CATAGGGAAGCAGGCTACCCCGGCCTGACCTGGGGTACAAGCCCCTTCCG
CTCCACTTGAGCCCTATGTTACCTTGCCAGCAGAGTCGCCTGACACACGT
AAGGGCCCACACAGGATTCCACACGGATTCCTAAGACCTTTAGTGAGTGG
AACACAACTTCTGCCAGGAGTCTGGTTCGAACACCAGATATCTGGGTACA
TTCCCTGCAAGAAGATAGCTTGCCTGCAGAGAATACTCTGACCACTGAAA
CTAAGGAGAGTGCTACCATCCAGGTCTGCTTATAGATGCTAACAGAGTCA
CCTGAAGAACAAGCTCTTAACAGTGACAACTAAAACAGCTAGCTTCAGAG
ATTACCAGATGGCGAAAGGCAAACGTAAGAATCCTACTACAAGAAATCAA
GACCACTCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_j01.b1 MSMg01no172_j01.b1 CHROMAT_FILE:
MSMg01no172_j01.b1 PHD_FILE: MSMg01no172_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:03 2005
         (190 letters)



>mm_chr5_86000497_86001086
          Length = 590

 Score =  348 bits (180), Expect = e-100
 Identities = 188/192 (97%), Gaps = 4/192 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatcagttaatccgaagagtgtcaatcatgcctgtttcacagatagttacatgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agtgatcagttaatccgaagagtgtcaatcatgcctgtttcacagatagttacatgatgt 331

                                                                       
Query: 61  ttctactgtcacttgttgaatagatttatggaattttagctgcatacttttagaaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttctactgtcacttgttgaatagatttatggaattttagctgcatacttttagaaaaatg 271

                                                                       
Query: 121 aaactccttg--tttgccaggaaaactgatctgcccctaactggctggctgtaggtgtaa 178
           ||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaactccttggatt--ccaggaaaactgatctgcccctaactggctggctgtaggtgtaa 213

                       
Query: 179 gtgaatttgaga 190
           ||||||||||||
Sbjct: 212 gtgaatttgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)