BAC Information

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BAC

Clone NameMSMg01-172K02
Chromosome5 (Build37)
Map Location 13,616,054 - 13,616,340
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668069, LOC433845, LOC625989, LOC670717, Sema3a
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172K02.T7 (MSMg01no172_k02.b1)MSMg01-172K02.TJ (MSMg01no172_k02.g1)
ACCAG368480AG368481
length722722
length of high quality
(start - end)
316 (43 - 358)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no172_k02.b1 PHD_FILE: MSMg01no172_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:08 2005CHROMAT_FILE: MSMg01no172_k02.g1 PHD_FILE: MSMg01no172_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTAGCAAGAATTTTATTGAATATTTTTGCATTGATATTCATAAGGG
AAATTGGTCTAAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGT
ATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTTCTTTCTAC
TTCTATTTTGTGAAATACTTTGTGCAGAACTGGAATTAGATCTTCTTTGA
AGGTCTGATAGAACTCAGCACTAAACCCATCTGGCCCTGGGCTTTTTTTA
GCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGAAATGGAACT
GTTTAGATTTTTTTTTTGCCTCCTCCCCTCACTTTGATACCTGGTATCTG
TCTAGAAATTCGTCCATTTTGACAAGAATTACCAGTTTTGTTGAGTATAG
CCTTTTGTAGAAGGATCTGATGGTGTTCTGGATTTCTTCAGGATCTGTTG
TTATGTCCCTTTTCAGTTCTGATTTTGTTAATTAGGATGATGTCTCTGTG
CGCTCTAGTGAGTCTAGCTAAGGGGTTATCTTTCTTGTTGATTTTCTCAA
AGAGCCAACCCTCATTTGGTTAATTTTTTGAATAGCTCTTCTTGTTTCCC
TTTGGTTGCATTCATACTTGAGCTTGATTCTTTCCTGCCTTCTACTTCCT
CTTGTGCGAATTTGCTCCTTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGAAACAGAGACCTTAAATTAAAAC
TCAAGGGAGTTTCCAGCCTAGAACCTTGAAAAATGCTGTTTTATCTTAAG
TCCTCTGTAAATCATGCTGAAACACTGCTGATTTGGTAATGTGCAACACA
GACTCCTAAAATTTGGATACAGAGAAAAACGATAAATTGGAAGCAATAGG
AACGGGGGTCTGGAAGCAAACTGAGGCACAAGGATATTTCCAAAGCCAGT
AATAACCACTAGATAAGCAGCTAGTGAAAGACAGACTGGAGCCACCAGTA
AAGAGGTGCTATTTTATTATCTTCGCCCCCCCAAAATACCAGCATTAAAT
GTATTAATTCAATTAATAAGTTCACTCTTCAATTTTTAATACAAAATATA
ACATTTGGATAAAAACCTTATAACATCAGCAGCTTTGATGTCACATGAAG
CCCCTGTTACAGAATGTTTATGCCTAAGTTTCCATTCACAGCATAAAATC
ATTCTCTCTCTGTTTCATTACAAGCGTTGTCCTGATGTGTACAGTGATAG
TTCCATGATTCCCAGAGAGCCTCTCGGACCTATTTTCTTTCACAGATGCT
CGCGGAAACCTAAGGTCCTTTCACGTTCACATCCAGCGCTATTTCCAATA
ACGGCCCATAACTTATTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_k02.g1 MSMg01no172_k02.g1 CHROMAT_FILE:
MSMg01no172_k02.g1 PHD_FILE: MSMg01no172_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:08 2005
         (289 letters)



>mm_chr5_13615854_13616542
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaacagagaccttaaattaaaactcaagggagtttccagcctagaaccttgaaaaat 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||
Sbjct: 201 aggaaacagagaccttaaattaaaactcaagggagtttccagccaagaagtttgaaaaat 260

                                                                       
Query: 61  gctgttttatcttaagtcctctgtaaatcatgctgaaacactgctgatttggtaatgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgttttatcttaagtcctctgtaaatcatgctgaaacactgctgatttggtaatgtgc 320

                                                                       
Query: 121 aacacagactcctaaaatttggatacagagaaaaacgataaattggaagcaataggaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacagactcctaaaatttggatacagagaaaaacgataaattggaagcaataggaacg 380

                                                                       
Query: 181 ggggtctggaagcaaactgaggcacaaggatatttccaaagccagtaataaccactagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggtctggaagcaaactgaggcacaaggatatttccaaagccagtaataaccactagat 440

                                                          
Query: 241 aagcagctagtgaaagacagactggagccaccagtaaagaggtgcta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcagctagtgaaagacagactggagccaccagtaaagaggtgcta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)