BAC Information

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BAC

Clone NameMSMg01-173B22
Chromosome5 (Build37)
Map Location 139,947,187 - 139,947,450
singlet/doubletsinglet
Overlap geneZfand2a
Upstream geneLOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30
Downstream geneUncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B22.T7 (MSMg01no173_b22.b1)MSMg01-173B22.TJ (MSMg01no173_b22.g1)
ACCAG368824AG368825
length744745
length of high quality
(start - end)
323 (45 - 367)302 (75 - 376)
definitionCHROMAT_FILE: MSMg01no173_b22.b1 PHD_FILE: MSMg01no173_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:44 2005CHROMAT_FILE: MSMg01no173_b22.g1 PHD_FILE: MSMg01no173_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGCTGGTTTAACACTTGAAAATCAAGCCCGGTAGCCCAGCAGTG
GTGGCACACACCTTTAATCCCAGCACTCTGGAGAAGAGACAGGCAGATCT
CTGTGAGTTCGAGGCCAGCCTGCTCTACAGAGTGAGTTCAAGGACAGCCA
GGGCTACAAAGAGAAACCCTGTCTCAAAAACCAAACCAAACCAAACCAAG
CCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAACCAAAACCA
AAACTAAACCAACAAAGAAAAAAAAAGCCAAAGAAAAAAATCAAGAAAGA
GAAACACCACTGATTCTTTTTGATGCCCCCCCCCCATTTGACAAAAAACA
CAGCACCCTGGTGCTCATACATACATGCAGGCAAACAGCCATACACATAA
GTAAAAATCAAATAAATATTTCTTAAATGTCGTTGTTGTTAGCTGTTGTG
GTATACACTTTTAATCCCCCAGAGGCAGAGGCAGAAGGATCTCTGTCTCG
AAACAACAACATAACTATTTAAGTACTATAAAAACATGAAAGACAAGAAT
AACTATGACAATAGATGTAAAAGACAGTATATAGAAAAGCATGGAACACT
GCATAGAAATTAAAGATCCACAGTGTGGAAAGAAGCTGAATCTGAGTTAG
AACAGGCAAGACTGGGCTGGAGAGATGGCTTAGTGGTTAAGAGC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGTACAGTGGCAAAGGTTAGAAC
CTAGCGTTGTGGGTTAACCCTTACCCAGAGCCCACCATTGAGGAGCTGGG
GCCACAATTCAATAGAAGAGCACTTGCCAAGAACCCCTCGGGCCTGGTTT
AGTGGAGTACCTGCCTGTCATGTCATCAGGCCTCAGATTCTCTCCCTACT
GCAAGGAAGCAAAATCACCAGGCTTTAGAGACAATGTCAAATGCAAGACA
TTGTGTGTTGAAATATTTTATGTATAATGATTAATAAAATGATAATAAAA
ATGATTTATTTCACTTGTTTTTTACCCTCCCCCGCCTCTCTAAATAACCC
TCACTATCCTGGATCTCACTATGTAGACCAGGCTGGCCTTGAACTCAGAT
TTTCCTGCCTATACCTAGGATCAAAGGTGTGCACCACCACTCTCCGCTTG
TTTCATTTGCGTGTGTGTTTTGCTAGTGTATGTGTACCGTGTTCATGCAG
AGGCCAGCTTTTCTTAGAAAATATGGATAATTCTTTTCAAGGTCTGCATT
TTGTGTGTGTAGTGCAGGTGTGTTTGCATGTTTGCACATGTAGGGGCACA
GGTGTACACGTAAATGTGGAGGCCTGAGAATAACCTTCAGTGTCGTCCTT
GGTCGCTTTCCCCTTGTAAGCTAAGGCAGAGACTCGCTGAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b22.g1 MSMg01no173_b22.g1 CHROMAT_FILE:
MSMg01no173_b22.g1 PHD_FILE: MSMg01no173_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:44 2005
         (302 letters)



>mm_chr5_139947015_139947716
          Length = 702

 Score =  472 bits (244), Expect = e-137
 Identities = 259/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaagtacagtggcaaaggttagaacctagcgttgtgggttaacccttacccagagcccac 61
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaagtacagtggcaaaggttagagcctagcgttgtgggttaacccttacccagagcccac 377

                                                                       
Query: 62  cattgaggagctggggccacaattcaatagaagagcacttgccaagaacccctcgggcct 121
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagtgaggagctggggccacaattcaatagaagagcacttgccaagaacccctcgggcct 317

                                                                       
Query: 122 ggtttagtggagtacctgcctgtcatgtcatcaggcctcagattctctccctactgcaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggtttagtggagtacctgcctgtcatgtcatcaggcctcagattctctccctactgcaag 257

                                                                       
Query: 182 gaagcaaaatcaccaggctttagagacaatgtcaaatgcaagacattgtgtgttgaaata 241
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 256 gaagcaaaatcaccaggctttagagacaatatcaaatgcaagacattgtgtgttgaaata 197

                                   
Query: 242 ttttatgtataatgattaataaaa 265
           | |||||||||||| |||||||||
Sbjct: 196 tcttatgtataatggttaataaaa 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)