BAC Information

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BAC

Clone NameMSMg01-173C01
Chromosome5 (Build37)
Map Location 82,121,994 - 82,122,342
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173C01.T7 (MSMg01no173_c01.b1)MSMg01-173C01.TJ (MSMg01no173_c01.g1)
ACCAG368829AG368830
length718683
length of high quality
(start - end)
349 (370 - 718)---
definitionCHROMAT_FILE: MSMg01no173_c01.b1 PHD_FILE: MSMg01no173_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:44 2005CHROMAT_FILE: MSMg01no173_c01.g1 PHD_FILE: MSMg01no173_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTATT
TATTGCTGCTGTAATAACAGGGGAATTGACGATAACCGAGTGATTTGTGG
ACATAGCTTCCGTGCCCAACTTCATACTGGCATTCTCCGTAGACAAATAA
GGACCCAGGTTATTATACAGGACAAAAGCCACTCTAATCTCTCCTAAAAT
AAATACAAATGTGAGTTAGAAATTGGAAGAAATGGATTAGTTTCTACACT
CTGCTGGAGTTTGTAACTCTAGTTAGGTGGTGCAGTCAAGACTATATAAA
TACATATTCACAGACATAAAACCAAGCATTCATTTGCTTGGTACCAAATT
GCTAAGCCTCCGCACGACGAAAGGGAAGTGGAATTTGATTGAGATCACTA
TATATAATTTCTTTAAACACCAAATCTGAATCCGAAGCCCTGTCTCACTG
CGTCCTTGAAACTAAATTCAAGATGCTTCCTCAACACAGAACCAGAATCC
AGAACCATATATGTTCTAGAACCAAATACAAGACCATCTCTTTATACTCT
AAAGAAAAATTATGTACATAGCTTCAAAAACCCTAGCCATAAAAATGGAA
AATTGAACTTCAACAAAGCTAAAATTTTGAACTTTTTAGAATATACCATC
AAGAAAACAAATATACGAACCACAGACTAGGGAATATGGGAGTCTGGAAT
TACAGAACATTCATGTTT
CGGTGGTGGGGGGTGGGGGGGGGGTTTGTTGTGGAGTTCGTTGGGGTGTG
GGAGGTAAGTGGCGGGGACGGGCGATTTACAGAAGGGGGTGGGGGGAGGG
TTTCCCCAAAGAGGGAGTACTTAAGGAGGTGAAGACGTTTGCCGGGGGGT
GTTGCCCATCACGTTTCACAACTTTTCTTGCTTTTCCACTTACCTATTCC
TGAAAGTTAATAAATAATCCCCCTGGATTTGCGCATTTCCCTCTTCCCCC
ATACGTCAGACACAATATTAATTCTCTCCCTGGGCCCAAAAGGGAAAATA
ACGGGGGGGGGGTTAGGGGTCCCCTTGGGGGGCGGGGACCGGGCCCCCCG
GGGGTTTTTCCCCCCCGAAAAAAAATTTTTAAAGGGGGTTGGGTAAAAAA
CCCTTTAATTAAGGAAAAAAAGGGGGTTTAATTTCCCCCCCGCCCGGAGG
AAAAAAATTTTCCCAATTTTTTTTTTTTTTAAAACCAATTGGGGGAAAAA
AAATAAAAGGGGGCTTTTTCTTCAAGTGCTTTTTAAAAAAATTCCCCTTC
CGGGGGGGGGGGGCCCCCCTTTTTAAAAACCCCCAAGGGGAAAAATGGGG
GGAAAAAATTTAAAAAAAACAAAAAAATTTTGGTGTGGTTTTTAAAAGCC
AAAACCCCCCCCCCCCGGGGGGGGGGGAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_c01.b1 MSMg01no173_c01.b1 CHROMAT_FILE:
MSMg01no173_c01.b1 PHD_FILE: MSMg01no173_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:44 2005
         (349 letters)



>mm_chr5_82121794_82122542
          Length = 749

 Score =  636 bits (329), Expect = 0.0
 Identities = 344/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagggaagtggaatttgattgagatcactatatataatttctttaaacaccaaatctga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 549 aaagggaagtggaatttgattgagatcactatatataatttctttaaacaccgaatctga 490

                                                                       
Query: 61  atccgaagccctgtctcactgcgtccttgaaactaaattcaagatgcttcctcaacacag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atctgaagccctgtctcactgcgtccttgaaactaaattcaagatgcttcctcaacacag 430

                                                                       
Query: 121 aaccagaatccagaaccatatatgttctagaaccaaatacaagaccatctctttatactc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaccagaatccagaaccaaatatgttctagaaccaaatacaagaccatctctttatactc 370

                                                                       
Query: 181 taaagaaaaattatgtacatagcttcaaaaaccctagccataaaaatggaaaattgaact 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 369 taaagaaaaattatgtacatagcttcaaaaaccttagccataaaaatggaaaattaaact 310

                                                                       
Query: 241 tcaacaaagctaaaattttgaactttttagaatataccatcaagaaaacaaatatacgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcaacaaagctaaaattttgaactttttagaatataccatcaagaaaacaaatatacgaa 250

                                                            
Query: 301 ccacagactagggaatatgggagtctggaattacagaacattcatgttt 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccacagactagggaatatgggagtctggaattacagaacattcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)