BAC Information

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BAC

Clone NameMSMg01-173H14
Chromosome5 (Build37)
Map Location 53,534,662 - 53,534,968
singlet/doubletsinglet
Overlap gene2310045A20Rik
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2
Downstream gene1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H14.T7 (MSMg01no173_h14.b1)MSMg01-173H14.TJ (MSMg01no173_h14.g1)
ACCAG369072AG369073
length731728
length of high quality
(start - end)
314 (46 - 359)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no173_h14.b1 PHD_FILE: MSMg01no173_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:09 2005CHROMAT_FILE: MSMg01no173_h14.g1 PHD_FILE: MSMg01no173_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGTTCTAGTTTATGTTACACAGGGTCCTCCATTCATCAGTGGG
AACAATGGTTCTCTTGTGAAAGGCACACTCATGTTACAGTTCTCAAAGCC
CGCTGGCCGTCTTGTTTCATTCAGTCTGTGATCATGAACACCACCCCAGA
ATACATAAGGTTCTTCAGAGCTATCCACATGGGTGTAAAGGTGGGACTCT
AATAACCATCCTATGTCTCCTAGACTCTCCCCTGACCTTCCTCCAAAGCT
TTTTTCAACCTGGTTCTTTATTCTCCATCTTTGGGAATGTTGAGATCTGG
CCCAAATTTGTTCTGTTCGCACCCCCCCCCAACGTGCGGCACCGTGGGGC
TGGTGGCCACGTACCAAACCATGAAATAAAAATGTCACCTTCAGAATGTC
ACAGAAGTAGAGAGAAGCCACATGTCAACTGTAAGATTGTCAATTAAAAA
TGTGCCCAGGGAAGTGCCTCTGACTCGTCCCTTCCAGCGGGTCCCTCTCC
ATCACAGGTGACAGCCGCTTGTTCTAAGACTTTCTGTTTGCCTGCACGCC
CACAGGAAATGTCTCAGGATGTCTATTATGAGAATCGAACAATTTTAGTT
CAAATTAAGTGATTCTTACCTTGAATAGCACAATGGCGTAGTCATATATC
AGCGCCGGATCCTCCGTCTCCAGGGACCCCC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATTTTTGNTGCACCTTTCTGTCCCTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGAAAAGAAATTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTT
ATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAAC
TTGATCCTGATTCAGCTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCAGTTTTTCCAGCTTTGTTGAGTATAGCCTTTTGTACAACGAT
CTGATGGTGATTTGGATCTCCCCAGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h14.b1 MSMg01no173_h14.b1 CHROMAT_FILE:
MSMg01no173_h14.b1 PHD_FILE: MSMg01no173_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:09 2005
         (314 letters)



>mm_chr5_53534458_53535171
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgttctagtttatgttacacagggtcctccattcatcagtgggaacaatggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgttctagtttatgttacacagggtcctccattcatcagtgggaacaatggt 264

                                                                       
Query: 65  tctcttgtgaaaggcacactcatgttacagttctcaaagcccgctggccgtcttgtttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcttgtgaaaggcacactcatgttacagttctcaaagcccgctggccgtcttgtttca 324

                                                                       
Query: 125 ttcagtctgtgatcatgaacaccaccccagaatacataaggttcttcagagctatccaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcagtctgtgatcatgaacaccaccccagaatacataaggttcttcagagctatccaca 384

                                                                       
Query: 185 tgggtgtaaaggtgggactctaataaccatcctatgtctcctagactctcccctgacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggtgtaaaggtgggactctaataaccatcctatgtctcctagactctcccctgacctt 444

                                                                       
Query: 245 cctccaaagcttttttcaacctggttctttattctccatctttgggaatgttgagatctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctccaaagcttttttcaacctggttctttattctccatctttgggaatgttgagatctg 504

                  
Query: 305 gcccaaa 311
           |||||||
Sbjct: 505 gcccaaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)