BAC Information

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BAC

Clone NameMSMg01-173N10
Chromosome5 (Build37)
Map Location 82,900,641 - 82,900,922
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N10.T7 (MSMg01no173_n10.b1)MSMg01-173N10.TJ (MSMg01no173_n10.g1)
ACCAG369327AG369328
length710714
length of high quality
(start - end)
316 (23 - 338)282 (60 - 341)
definitionCHROMAT_FILE: MSMg01no173_n10.b1 PHD_FILE: MSMg01no173_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:35 2005CHROMAT_FILE: MSMg01no173_n10.g1 PHD_FILE: MSMg01no173_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACAACTCACTTAAAGAA
ATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGA
AAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAA
CCAAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAG
GTGATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACAC
AATAAAGAAAACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTATGAA
AGAAATCTGGAACCATAGATGCCAGCATCAGCAACTTTTTTTTTACCCGG
ACGNACCAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACA
ATCAAAGAAAATGGAAAATGCGAAAAGATCCTAACTCAAAACATCCAGGA
AATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATG
AGAATGAATATTTTCAACTCATAGGACCAGCAAACATCTTCTACAAAATT
ATTGAAGAAAACTTCCCATATCTAAAGAAAGAGATGCCCATGATCATACA
AGAAGCCTACTGAACTCCAAATAGACTGGATCAGAAAAGATATTCCTCCC
AACACATAATAATCAGAACACCTAATGCACCTATATAAAGATAGAATACT
AATAGCCGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATCGAATTTAATTGCTTCTTTTGTTCAATAAAAACCCTGA
GTTCTTTAAGAGGATTAGCTCTTTCTAAAGTATGTATAACTATCTTTTGT
GTGTAACAGAAAAACCAAAGCCATTTGTTTTGTTTATTTAAGAAAAGGAA
GTTTCTTGTAGATAGTAAATGTTAGGACTGACCTATAAAGACCTAAAGAT
ATGTCACATATCCTCCAGGCATACTTTGATTTTTCATTTTTATTTCCCAG
TATTTGCACCTCACGTTTTCTTTCATTTACACTAACAAATCTTTTTATTT
GCCCCCCCCCCACCCAAGTAGATTCTAAGTTTCTGTTATTATGTGCTGTT
AACATAGAAAGACAAGTAAATATAATACTTATGATCCATACATAATTACA
AAATCTGAGTGTAAGCATTTATTTACCTTTAATATTAGAGCTGACATATT
TGAAAACAAACAGCCCCTAAGAAAGTGCTAGATTGCTACATAAAATAAGC
AAGTATCAAACCCAGATAAACAAAGAAAAATGAATGGTCTTACCAAATTA
GTTACTGCATGTAAAAACCCCAGATTGAGGAGGACAAAGAACTTCTGATT
CTCGACTATACATCGGATATTAAGATTTCACATTAATGTTCACTGGCAGT
TTTATTCCGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n10.g1 MSMg01no173_n10.g1 CHROMAT_FILE:
MSMg01no173_n10.g1 PHD_FILE: MSMg01no173_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:35 2005
         (282 letters)



>mm_chr5_82900441_82901122
          Length = 682

 Score =  499 bits (258), Expect = e-146
 Identities = 276/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcgaatttaattgcttcttttgttcaataaaaaccctgagttctttaagaggattagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatcgaatttaattgcttcttttgttcaataaaaaccctgagttctttaagaggattagc 423

                                                                       
Query: 61  tctttctaaagtatgtataactatcttttgtgtgtaacagaaaaaccaaagccatttgtt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 422 tctttctaaagtatgtataactatcttttgtgtgtaacagaacaaccaaagccatttgtt 363

                                                                       
Query: 121 ttgtttatttaagaaaaggaagtttcttgtagatagtaaatgttaggactgacctataaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 362 ttgtttatttaagaaaaggaagtttcttgtagatagtaaattttaggactgacctataaa 303

                                                                       
Query: 181 gacctaaagatatgtcacatatcctccaggcatactttgatttttcatttttatttccca 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 302 gacctaaagatatgtcacatatcctccaggcatactttgaattttcatttttatttccca 243

                                                     
Query: 241 gtatttgcacctcacgttttctttcatttacactaacaaatc 282
           ||| ||||||||||| |||||||||||||||| |||||||||
Sbjct: 242 gtaattgcacctcacattttctttcatttacaataacaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)