Query= MSMg01no173_o19.b1 MSMg01no173_o19.b1 CHROMAT_FILE:
MSMg01no173_o19.b1 PHD_FILE: MSMg01no173_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:41 2005
(246 letters)
>mm_chr5_8481696_8482341
Length = 646
Score = 445 bits (230), Expect = e-129
Identities = 242/246 (98%)
Strand = Plus / Minus
Query: 1 cacatatagattattcttactctgtgctgtgtgacatgagctgtaacaaccataatcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 cacatatagattattcttactctgtgctgtgtgacatgagctgtaacaataataatcaat 387
Query: 61 aaatgaacttacttgtattcgcttcagccagtattagctataatcagcctatatttacca 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 386 aaatgaacttacttgtgttcgcttcagccagtattagctataatcagcctatgtttacca 327
Query: 121 atataggtggattaaatggtaaactgctttcattgaaaccactaaaccttgtgagtttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atataggtggattaaatggtaaactgctttcattgaaaccactaaaccttgtgagtttat 267
Query: 181 tgttaccaataaactctgacattgtgcaaagacagcgatgtgttgatttaggtttccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgttaccaataaactctgacattgtgcaaagacagcgatgtgttgatttaggtttccagc 207
Query: 241 aacccc 246
||||||
Sbjct: 206 aacccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no173_o19.g1 MSMg01no173_o19.g1 CHROMAT_FILE:
MSMg01no173_o19.g1 PHD_FILE: MSMg01no173_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:41 2005
(583 letters)
>mm_chr5_8326836_8327818
Length = 983
Score = 1081 bits (559), Expect = 0.0
Identities = 577/583 (98%)
Strand = Plus / Plus
Query: 1 ttaaaatgccttctgcaaaactacaacccaaagggtgaatgaactcttgtctaatctgat 60
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 201 ttaaaatgccttctgcaaaactacaacccaaaggatgaatgaactcttgtataatctgat 260
Query: 61 tatagataatctggcttactgactgttttgaaggaacgttatataatgattccttttctt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tatagataatctggcttactgactgttttgaaggaacgttacataatgattccttttctt 320
Query: 121 caatttcaacctaaaaataagtataattaaatctattctgcaactgatatgcagctacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatttcaacctaaaaataagtataattaaatctattctgcaactgatatgcagctacac 380
Query: 181 attttcttgtagtaaaagaaaaaaattttttctttgttccagagtccttgaattccttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcttgtagtaaaagaaaaaaattttttctttgttccagagtccttgaattccttca 440
Query: 241 tgagagaataacccaaagcttttaaaaagcaaattcaatttctactttccttcttcctaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagagaagaacccaaagcttttaaaaagcaaattcaatttctactttccttcttcctaa 500
Query: 301 accaatacagcctcagcagtgagataaactgaacccatgaaatcaataaaaaaaataaaa 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaatagagcctcagcagtgagataaactgaacccatgaaatcaataaaaaaaataaaa 560
Query: 361 taaaataaaaaattctacttaaaaattaggtagaaaaaaactgttttttacagaatagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaataaaaaattctacttaaaaattaggtagaaaaaaactgttttttacagaatagaa 620
Query: 421 aaaatagctactaacacactttatactcaactacagagccactttcacattatttccact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaatagctactaacacactttatactcaactacagagccactttcacattatttccact 680
Query: 481 gtcattctatttacaatagctcgagaatgaaatcaacctatatatgtaccaagagatgga 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcattttatttacaatagctcgagaatgaaatcaacctatatatgtaccaagagatgga 740
Query: 541 cggataaaaaaatacaacacctatgtacaatacaatgttgcta 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cggataaaaaaatacaacacctatgtacaatacaatgttgcta 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
