BAC Information

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BAC

Clone NameMSMg01-174D15
Chromosome5 (Build37)
Map Location 75,700,994 - 75,701,295
singlet/doubletsinglet
Overlap genenone
Upstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
Downstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174D15.T7 (MSMg01no174_d15.b1)MSMg01-174D15.TJ (MSMg01no174_d15.g1)
ACCAG369587AG369588
length734736
length of high quality
(start - end)
323 (45 - 367)350 (381 - 730)
definitionCHROMAT_FILE: MSMg01no174_d15.b1 PHD_FILE: MSMg01no174_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:02 2005CHROMAT_FILE: MSMg01no174_d15.g1 PHD_FILE: MSMg01no174_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCGAGAGATGGCCTCGTGCTTGGTAAGTTCTTGTGAGGGTAACCTC
CCAGGAACCCAATGTTACCTACATAGCTTGCTACGTACAGATCTGGGACA
GAATTTGGGACTTGAACGCCACTCACAGAGCTGGATATGGTAGCTCACAC
TCTTCATCCCAGCACTGGGGAGACTGAAGATGGAGGACTGTGAGTTCAAG
ACTAGCCTGGGCTACATGGACATCTTCAACACTAGCTCATTGGGGCTGAG
AAGGGGAAGTCAAAGGTCAAGAAGTTGCTTAGCCTTTGTAAGGCCCCAGA
TTCTATCCCCCAATCGATTTAAGTCACGCGCACTGGGTATAGTAGCATAC
AGTTGGAGGGCATCAGCAGACTGATCCTGAGTTCACTCTCATACTGGGTT
TCAGGCCAGCCTAGGCTACATGAGACCCTAGAGCAAAATGCCAAAAGGAA
AGAGTCTTTTTTTTTTTTTAATGCACATGAGTACACTGTAGCTCAGACAC
ACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCTTGC
AGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTT
AACAGCTGAGCCATCTGTCCAGCCCACAGAAAGAAAGTCTTAATTGTATC
ATTGGAATGATTTTGGCCTGACCAAAATATTGCN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAATCAGTGTTTATCTTCCCACCAAT
AAAGATTTATTTATTTATTTCCCAATTTGCTCAAAAATAAATTCAGATTG
GGTTGGGCAAAGAAAGACTTTAAAAAAAAAACAAAGACGAAACACAAAGA
GTAAAAACAAAACTTTTTGATATATTTGATGATTAAAGTTAAGAACTTGT
CTTTCAAAAGACTGGAGGAAAGGCTATAAAATAATATACAAACCAGAATA
AGTTACTTAACCTTTAGGTTACTGGTATCCATATATAAATATTTTAAACC
TTTTCAAACTGATTGAGAAAACGGCACCCCAATGAAAGATAATATAGTCG
TAATATATAACATATAATTTATAAAAAGGTATTTTACAGAAAAAAACCCT
ACCAGCAATAAATATATAATTAAAATGTCTTTATTTTGTGAAGTTGTTAG
TTTAAAATGTCAACTTCCTATAACATAGAGTCATCTGCAAAGAGCATCTT
AAGTGTGTGTATAGGGGGCAGTCTTTTGTTTTGTTTTGTTTTGTTTTCGA
GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA
CCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC
AGTCTTGATTGGTGACCTTGACTATTGCCCACTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_d15.g1 MSMg01no174_d15.g1 CHROMAT_FILE:
MSMg01no174_d15.g1 PHD_FILE: MSMg01no174_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:02 2005
         (350 letters)



>mm_chr5_75700903_75701652
          Length = 750

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%), Gaps = 2/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 49  gtattttacag-aaaaaaaccctaccagcaataaatatataattaaaatgtctttatttt 107
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtattttacagaaaaaaaaccctaccagcaataaatatataattaaaatgtctttatttt 334

                                                                       
Query: 108 gtgaagttgttagtttaaaatgtcaacttcctataacatagagtcatctgcaaagagcat 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgaagttgttagtttaaaatgtcaacttcctataacatagagtcatctgcaaagagcat 274

                                                                       
Query: 168 cttaagtgtgtgtatagggggcagtcttttgttttgttttgttttgttttcgagacaggg 227
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cttaagtgtgtgtata-ggggcagtcttttgttttgttttgttttgttttcgagacaggg 215

                                                                       
Query: 228 tttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaac 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaac 155

                                                                       
Query: 288 tcagaaatccacctgcctctgcctcccaagtgcagtcttgattggtgaccttgactattg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcagaaatccacctgcctctgcctcccaagtgcagtcttgattggtgaccttgactattg 95

              
Query: 348 ccc 350
           |||
Sbjct: 94  ccc 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)