BAC Information

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BAC

Clone NameMSMg01-174E18
Chromosome5 (Build37)
Map Location 62,795,534 - 62,795,850
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream geneCentd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174E18.T7 (MSMg01no174_e18.b1)MSMg01-174E18.TJ (MSMg01no174_e18.g1)
ACCAG369636AG369637
length737741
length of high quality
(start - end)
330 (45 - 374)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no174_e18.b1 PHD_FILE: MSMg01no174_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:08 2005CHROMAT_FILE: MSMg01no174_e18.g1 PHD_FILE: MSMg01no174_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTTTTCTTTCACTGAATCAATAAAATTTGTGAACATATAGTGCA
CCAGACATAATACTAAATGAAATTCTCATTTATTAGAAGCTTAACCTTCT
TGCAGACCTTATGGTTTTTGATATTTTATATTTTTATGCAATATATACAT
ATATATTTCTCTGCAATGATATATGCATATGACATATATGACATAGGTCC
CAACACAGAAAAGTCATATGACACAGACTTAAAAGGACACATTTTAGTCA
ATCTAAACATACCTATTTATATTAGGTTTATCTCCTTGGCAGTTGGATTT
TTAAATTTTATTATTATTATTATCCCCCGCTCTCATTTCATTTTGGTGGC
TAAAATCTCTTCAGGGATCCTGGATATAGAACATGTGGGACATAAGTCAG
TATTTACAACTTTTTGTTCCTGGTAAATGGGTGGTCTGGACAATCCAACT
ATGTTTCTATCTGCTGACGTGTTCACTCTGCAGTTTCTCAGTCTGTTTTT
CACTATGCTCTTGCCCAACCTGGGCATTTTGTATTTTTAGTCTTGTGCCA
ATACAAGTGGTATATTCCAATTTTTGACTTTTCTATTTCCTTGGATAGAA
AACCCATTAACTTCCAGCAGAAAAGTATTGATTTGGAATCTTTATGATAC
ATACTGTTGCTTCTAGAATAATTGGATTCACCTACTA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCGTTCTCCAACAACTTCTC
TGCCTGCATGCCACTATGCTTTCTTCCATTATGATAATGGACTAAAACCT
CTGAATCAGTAAGCTATCCCCAGAGTAAATATTTTCCTTTATAACAGTTT
CTGTTTTAACAGACTATGTTATTTCTCTTTCTGAATAAGATTCAAATGTC
CTAACTTGGGGCTCCCTTGTTATTTATCTTCTTTGGGTCTGAAGAGTGGG
TATTCTGTAATTTTTGCCTAATATTAACTTCTAAGTGAGTACATACCATG
TATGTCTTTTTGGGTTTGGTTTACNTNACTNACCCATGGTATATTTTTAG
TTTTATTTGCCTGCAAATTTCATGTTCTTGAAAAAAATAGCTGAATAGTA
TTCCATTGTGTAAATGAACCACATTTTCTTTAGTCAGCCTTGATTGAGGT
ACATCTAGGTTGTTTCCAGTTTCTGGCTATTACAAATAAAACTGATATGA
ACATAGTGGAGCAAGTATCCCTGTGGTATAGCTGGGTTGAGATTCAGTAG
GAGAGAATGTGCCTAGATATTCTGGAACTAGATGCCCCAACATGAGATGA
TAGAACATCTTTTGTGTATAAGTTCACAAATGGGATAGCAGAGGCTTGAG
GTACCACCATTCCCAGTATTATGAGAAACCACCAGATTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_e18.b1 MSMg01no174_e18.b1 CHROMAT_FILE:
MSMg01no174_e18.b1 PHD_FILE: MSMg01no174_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:08 2005
         (330 letters)



>mm_chr5_62795171_62795900
          Length = 730

 Score =  576 bits (298), Expect = e-169
 Identities = 315/326 (96%), Gaps = 9/326 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgttttctttcactgaatcaataaaatttgtgaacatatagtgcaccagacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattcttgttttctttcactgaatcaataaaatttgtgaacatatagtgcaccagacat 621

                                                                       
Query: 65  aatactaaatgaaattctcatttattagaagcttaaccttcttgcagaccttatggtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatactaaatgaaattctcatttattagaagcttaaccttcttgcagaccttatggtttt 561

                                                                       
Query: 125 tgatattttatatttttatgcaatatatacatatatatttctctgcaatgatatatgcat 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  
Sbjct: 560 tgatattttatatttttatgcaatatatacatatgtatttctctgcaatgatatatgc-- 503

                                                                       
Query: 185 atgacatatatgacataggtcccaacacagaaaagtcatatgacacagacttaaaaggac 244
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 -------atatgacataggtcccaacacagaaaagtcatatgacacagacttaaaaggac 450

                                                                       
Query: 245 acattttagtcaatctaaacatacctatttatattaggtttatctccttggcagttggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 449 acattttagtcaatctaaacatacctatttatattaggtttatctccttggcagttggag 390

                                     
Query: 305 ttttaaattttattattattattatc 330
           ||||||||||||||||||||||||||
Sbjct: 389 ttttaaattttattattattattatc 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)