Query= MSMg01no174_m05.b1 MSMg01no174_m05.b1 CHROMAT_FILE:
MSMg01no174_m05.b1 PHD_FILE: MSMg01no174_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:42 2005
(313 letters)
>mm_chr5_97631943_97632651
Length = 709
Score = 526 bits (272), Expect = e-154
Identities = 302/322 (93%), Gaps = 18/322 (5%)
Strand = Plus / Minus
Query: 5 gaattcctgtgttagtatatgtctatgcttgtttttctgtcttgcttggcttagacccag 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 gaattcctgtgttagtatatgtctgtgcttgtttttctgtcttgcttggcttagacccag 316
Query: 65 gtatagaaccctatgctgataaattccaaatgcaaataccttgtagaacgaacatgagtc 124
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 gtatagaaccctatgctgataaattccaaatgcaaataccttgtagaacg----tgagtc 260
Query: 125 tatttcctacctcagtttttagcagtaattagataactggggg-------------gggg 171
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 259 tatttcctacctcagtttttagcagtaattagataactgggggagggggcgggggcgggg 200
Query: 172 gcaggggggagcacctaggtacatgtttacctcagtattaccataactgagaggaaagaa 231
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gc-ggggggagcacctaggtacatgtttacctcagtattaccataactgagaggaaagaa 141
Query: 232 tttacctcacaatcttacttgcgtgctgttctttggtttgacatatgtatggagagggtg 291
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tttacctcacgatcttacttgcgtgctgttctttggtttgacatatgtatggagagggtg 81
Query: 292 tttatcttgacagtctgttcct 313
||||||||||||||||||||||
Sbjct: 80 tttatcttgacagtctgttcct 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 709
Length adjustment: 9
Effective length of query: 304
Effective length of database: 700
Effective search space: 212800
Effective search space used: 212800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_m05.g1 MSMg01no174_m05.g1 CHROMAT_FILE:
MSMg01no174_m05.g1 PHD_FILE: MSMg01no174_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:42 2005
(290 letters)
>mm_chr5_97503023_97503712
Length = 690
Score = 553 bits (286), Expect = e-162
Identities = 289/290 (99%)
Strand = Plus / Plus
Query: 1 catttttctgactgctgaggatttgaatttaccaattttatgagtgtataaccatttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttttctgactgctgaggatttgaatttaccaattttatgagtgtataaccatttgca 260
Query: 61 gtcttttttcttctgtaggtttttggtgaaagtgctaaatgtgtctttgtaataagcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttttttcttctgtaggtttttggtgaaagtgctaaatgtgtctttgtaataagcagg 320
Query: 121 gtttgaaactcaagttcaatatgttacaaatacaaatagctagtattaagtgaaccgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgaaactcaagttcaatatgttacaaatacaaatagctagtattaagtgaaccgggc 380
Query: 181 taattaagtagattgaatttaatgtaatctagcactgattaatctccttgaacttgattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattaagtagattgaatttaatgtaatctagcactgattaatctccttgaacttgattt 440
Query: 241 tgtagtaacaaacaggcattcattcacctttggacaaagcccagtcctta 290
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgtagtaacaaacaggcattcattcaccttcggacaaagcccagtcctta 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
