BAC Information

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BAC

Clone NameMSMg01-174O15
Chromosome5 (Build37)
Map Location 68,896,565 - 68,896,918
singlet/doubletsinglet
Overlap genenone
Upstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174O15.T7 (MSMg01no174_o15.b1)MSMg01-174O15.TJ (MSMg01no174_o15.g1)
ACCAG370071AG370072
length732738
length of high quality
(start - end)
306 (46 - 351)355 (384 - 738)
definitionCHROMAT_FILE: MSMg01no174_o15.b1 PHD_FILE: MSMg01no174_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:53 2005CHROMAT_FILE: MSMg01no174_o15.g1 PHD_FILE: MSMg01no174_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TCAATATTCATAAGAGATTTTGGTCTGAAGTTCTCTATCTTTGTTGGGNC
TTTCTGTTGGTTAGTTCCNAGNACAATACCCGGCTTCATAAAATGAGTTG
GGTAGAGTACCTTCTACCTCTAAAAAAAAAAATAGTTTGTGCGGAATTGG
AATTACATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTG
GTCCTGGGCTTTTTTTGGCTGCGAGACTATTAATAACTGCTTCTATTTCT
TTATTTGATATGGGACTGTTTTAGATGTTCAACTTGAACCTGATTTTCTT
TGATACCCGCTATCTGCCCTTATTTTTTTTTATTTCCCCCCCCCCCCCCT
TTCTTTGTCTTTTATAACCTCTTTTCTTACCCCCCCCACGTTCTCTTTTA
TCTCCCTCTCCTATTTCTCTATTCCTCCTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAAGTTCTATGAAATGTACT
GTGTTTCGTTACTACTCCTGTAACCATCCGCAATGCCTACCCCCTTAACT
TGTGAATATAAGTATTACTTTTATAAAAAGTAAGATCATTAAAGATCAAA
TACAATAGAAATGATGCTAAAAATCAGAAACAAGATTTTATATGTATCAA
TTAATTTTTCACAAAATCTACTCATAAACTTTCCTTCCTTTCTTTGGTGA
GAATTTCAGAAAGGAGAATAAAACTCAGAGTAATTAATGCTGCTAACTAA
AAGTTTGACCTATATTATTTGTGTTTCACTACTATTTGCAGGTTATTGCA
TAGAACCAATATTATGCCCAAATATTCTCTGCATTCTCCACACTTCCCAA
GAAGAAATAAGAACCAAAAGTAATTAGCAACAAGGACTAATGATGATAGA
TTCCAGCTAAAGTAAGAAGTGTATATATAACATAATAAATTTCAAAATAT
TATGTGGTATGGTTCTCTCAGGGCTAGAATTTTTATACAGAAATATTACA
ATGAATATGTTTACAGTATATAGAAAGAACTATACATAAATGTAATAAAA
AGAAAATCCTGACAATATATGTAAAATTTAATCAGTTCCCAGAGATACAA
ATTTTTAAAGTTTGATTTTCTTTGTAGATTTACTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_o15.g1 MSMg01no174_o15.g1 CHROMAT_FILE:
MSMg01no174_o15.g1 PHD_FILE: MSMg01no174_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:53 2005
         (355 letters)



>mm_chr5_68896365_68897119
          Length = 755

 Score =  563 bits (291), Expect = e-165
 Identities = 339/355 (95%), Gaps = 2/355 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgcaggttattgcatagaaccaatattatgcccaaatattctctgcattctccacac 60
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 atttgcaggttattgtatagaaccaatattatgcctaaatattctctgcattctccacac 260

                                                                       
Query: 61  ttcccaagaagaaataagaaccaaaagtaattagcaacaaggactaatgatgatagattc 120
           ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||
Sbjct: 261 ttcccaagaagaaataagaactaaaagtaattagcagcaaggactgatgatgatagaatc 320

                                                                       
Query: 121 cagctaaagtaagaagtgtatatataacataataaatttcaaaatattatgtggtatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cagctaaagtaagaagtgtatatataacataataaatttcaaaatattatgtggtattgt 380

                                                                       
Query: 181 tctctcagggctagaatttttatacagaaatattacaatgaatatgtttacagtatatag 240
           ||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 381 tctttcagggctagcatttttatacaaaaatattacaatgaatgtgtttacagtatatag 440

                                                                       
Query: 241 aaagaactatacataaatgtaataaaaagaaaatcctgacaatatatgtaaaatttaatc 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaactatacataaatgtaacaaaaagaaaatcctgacaatatatgtaaaatttaatc 500

                                                                  
Query: 301 agttcccagagatacaaatttttaaag-tttgattttctttgtagatttactaaa 354
           |||||||||||||||||||||| |||| |||| |||| |||||||||||||||||
Sbjct: 501 agttcccagagatacaaattttaaaaggtttgttttt-tttgtagatttactaaa 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)