BAC Information

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BAC

Clone NameMSMg01-175B06
Chromosome5 (Build37)
Map Location 86,424,743 - 86,425,081
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175B06.T7 (MSMg01no175_b06.b1)MSMg01-175B06.TJ (MSMg01no175_b06.g1)
ACCAG370180AG370181
length691720
length of high quality
(start - end)
338 (44 - 381)287 (88 - 374)
definitionCHROMAT_FILE: MSMg01no175_b06.b1 PHD_FILE: MSMg01no175_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:05 2005CHROMAT_FILE: MSMg01no175_b06.g1 PHD_FILE: MSMg01no175_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCAAAGAGGATCCGCGGAATTCTATAGTTCCTTACGTTACCT
CGCCGGCCTTAGGCAGGCGAGCCTTCCGGCGTTCGGGGGATTCATTTCTA
CACCGGTGGCAGTTCTGTAGGTTTGAAGCTCGGTGGCCTCGCTTGGCCTC
AGCTGACACGGTTGCTCTGTGCTCCATGTGCTCTCTTACTGAGTGCACTA
GCTTCACTTTTTTTTTTTTCGTGAAAAAGCAAACAAGCTTTTTCCACATT
AAGGCTTACACTTGGAACTAGCCTGAGGGAAAGAAAAATTTTTTTGTCAC
ATGTGACTTTGCACTTTTTTTTGTTTTTTGGTTTTTTGGCTTTTTTTTTT
TTTGGCTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTCCTCTGTATAC
CCCTGGCTGTCCTGGAACTCACTTTGTACACCAGGCGGCCCTCAAACTCA
GAAATCCACCTCCCAAGGGTGTGTGCCACCACTCCCGGTTGCACATTTTT
TGTATTAGATATTTTCTTTATATACCTTTCAAATTTCAAATGCTATCCCC
AAAGTTCCCTATTACCACCCCCCCCCCCTAACCACCCACCCCTACCACCA
ACTCCCGCTTCCTGCACCTGCGATTTCCCTCGTACCGCCCCCCTCTCCCG
CCCCCCCCATCGAAACGCCCCCTCTTTCCCCCAAATGGCCC
NCTTCACCCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCT
GTACCTTATTTTTAAATTGGGTGATTTGGTTTGTTGGTGTCTAATTTCTC
AAGTTCTTTTTATATTTTGGATGTTAGTCCTCTTGTCAGCTATAGTGTTG
GTGAAGATCTTTTCCCATTCTATAGGCTGCCATTTTGTCCTATTGATGGC
ATCTTTAGCCTTGCAGAAGCTTTTCAGTTTCCAGGGCTTAAAGCTTGGAA
TGTGGGTGGCAAGCTCCTTCTTAGTCATCTTGCCTGCTTCTAGGGTGCTT
TATAGTATTATACTGGACAGTTGATATACACTTGCCCCATGCCTGCATGA
AAATATGTTCTCTTATTAATTATGTATTGTACTGGAATTATTTGAAGATG
AGTTGTATTTGATTATATTTTAAAAAAATTGATAGTTAACTTTTCTTTCA
GGATCATCTAAAGAACTACCACAGAAGATATTGCCGGTCTTCCAGGTACC
ATTTTTATACTTGAACTTTTAACGTGACTTATTTTCATCTTTAGAAAATG
GATTTTGAAGATAAAAAAGTTGTTACCTTGGACTGATTAATTTCTATGCC
CACTAATTGTTTGGTCTTTTAATTATTTTATATAAGAAAGAAATATTAAC
ACAAGTTGTATAATAACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_b06.b1 MSMg01no175_b06.b1 CHROMAT_FILE:
MSMg01no175_b06.b1 PHD_FILE: MSMg01no175_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:05 2005
         (338 letters)



>mm_chr5_86424543_86425283
          Length = 741

 Score =  553 bits (286), Expect = e-162
 Identities = 327/344 (95%), Gaps = 11/344 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttacctcgccggccttaggcaggcgagccttccggcgttcgggggattcatttctacac 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gttacctcgccggccttaggcaggcgagtcttccggcgttcgggggattcatttctacac 260

                                                                       
Query: 61  cggtggcagttctgtaggtttgaagctcggtggcctcgcttggcctcagctgacacggtt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggcagttctgtaggtttgaagctcggtggcctcgcttggcctcagctgacacggtt 320

                                                                       
Query: 121 gctctgtgctccatgtgctctcttactgagtgcactagcttcacttttttttttttcgtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gctctgtgctccatgtgctctcttactgagtgcactagcttcacttttatttttttcgtg 380

                                                                       
Query: 181 aaaaagcaaacaagctttttccacattaaggcttacacttggaactagcctgaggg-aaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aaaaagcaaacaagctttttccacattaaggcttacacttggaactagcctgaggggaaa 440

                                                                       
Query: 240 gaaaaattttttt--gtcacatgtgactttgcacttttttttgttttttggttttttggc 297
            ||||||||||||  ||||||||||||||||||||||||||| ||| ||| |||||||| 
Sbjct: 441 aaaaaatttttttttgtcacatgtgactttgcactttttttt-tttgttg-ttttttgg- 497

                                                       
Query: 298 tttttttttttttggctttttttttttttt---ggtttttcaag 338
             ||||||||||||| ||||||||||||||   |||||||||||
Sbjct: 498 --tttttttttttggttttttttttttttttttggtttttcaag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 741
Length adjustment: 9
Effective length of query: 329
Effective length of database: 732
Effective search space:   240828
Effective search space used:   240828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)