BAC Information

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BAC

Clone NameMSMg01-175B11
Chromosome5 (Build37)
Map Location 57,100,087 - 57,100,373
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175B11.T7 (MSMg01no175_b11.b1)MSMg01-175B11.TJ (MSMg01no175_b11.g1)
ACCAG370187AG370188
length729728
length of high quality
(start - end)
228 (128 - 355)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no175_b11.b1 PHD_FILE: MSMg01no175_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:05 2005CHROMAT_FILE: MSMg01no175_b11.g1 PHD_FILE: MSMg01no175_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAAATCCGCGGAAT
TCTCAACTGTTTCCAACAAAATGGTTGAAAAGCACCTAAATAAATGTTCA
ACATCTTTTGTCATTTTTGGCCTACAACTAAAAACAACACTGAGATTCCA
TCTCACATCAGTCAGAATGGCTAAAATAAAAAACTAGCTGGGCAGTGGTG
GCACATGCCTTTAATCCAAGCACTTGGGAGCCAGAGGTAGGCAGATTTCT
GAGTTTGAGGCCAGCCTGGTCTAGAGAGTAAGTTCTAGGACATCCAGGAC
TACACAGAGAAACCCTGTCTCCAAAAATCAAAATAGAGAAAAAAAAAAAA
AAAACTCTGCTGNATTTCCCCCCCCCCCCCCGGTGTGGAGAAAGAGGAAC
ACTCCTCCACTGCCGCCACAACAAAAAAAAAAATCAGTTTGGCGGTTTCC
CAGGAAATTGGACATTGTATTACCTGAGGACCCAGCTATACTACTCCTGG
GCATAGACTCAGAAGATGCTTCAACTTGTAATAAGGAAACATCCTGCACT
ATGCTCACAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGTTCCTTAAGAGAGGAATGTATACAAAATGCATCCAGTTACACAATGG
AGTACTACTCAGCTATTCCGAACAATGACTTCATGAAATTCATATGCAAA
CACGCGGAATTAGAAATATCCTGCTGAGT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTGCCAGTCTTGCAAGATATGAGAAGA
CAAAAACATATACACCTGACATTGTAGGGAATATTTTTTACCAAGTCTGA
AATATGGAAACACAACAGAGAACATAATGATCTTCTAACCTCAATTTTCT
TTCTTAGAAACTCACAGAGTTGTGATAATAAATGCCAGTTTCACAAAGGA
ACAAACATTTATTTATTACTTTATCCTTTCAAATGTTTGTTGAGATTATA
ATGTGATCCAGAAATTCAGGGGGGTCTAAATAATCACAAATAACATACCA
AAACAGCAATTAGGTATTTACCCCCCCGCCCCATTTATTATGGAATTTAT
GTGCCTGAACTGAGCGCACTTTAACATGAAAAAGATAATGAAATGAGGGA
ATTCACTAACATGGCCAAATTTCTAGTAATGGAGCTAATAAACAATAATA
ACTATTCTAGAATACCTTGATGTTTGTTTCTCTATTTGATACTGAATATT
GTTTTTCAGAATTCTATACGAAAAAATTCTTTGTTTCTAATCCTAATACC
TGGAAACAAACTTGGAAGACTCTGATAAACTAAGTGAAAAAATGAGATTC
TAAAATTTCTGCCAATTCTTTGTGGAATACTTGAACTTCCTAAACCCCAT
CACTAGGCGTATTATCATTAAAATGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_b11.g1 MSMg01no175_b11.g1 CHROMAT_FILE:
MSMg01no175_b11.g1 PHD_FILE: MSMg01no175_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:06 2005
         (289 letters)



>mm_chr5_57099887_57100574
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgccagtcttgcaagatatgagaagacaaaaacatatacacctgacattgtagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgccagtcttgcaagatatgagaagacaaaaacatatacacctgacattgtagggaa 260

                                                                       
Query: 61  tattttttaccaagtctgaaatatggaaacacaacagagaacataatgatcttctaacct 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttttaccaagtctgaaatatgaaaacacaacagagaacataatgatcttctaacct 320

                                                                       
Query: 121 caattttctttcttagaaactcacagagttgtgataataaatgccagtttcacaaaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattttctttcttagaaactcacagagttgtgataataaatgccagtttcacaaaggaa 380

                                                                       
Query: 181 caaacatttatttattactttatcctttcaaatgtttgttgagattataatgtgatccag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacattt-tttattactttatcctttcaaatgtttgttgagattataatgtgatccag 439

                                                           
Query: 241 aaattcaggggggtctaaataatcacaaataacataccaaaacagcaa 288
           ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 aaattcaggggggcctaaataatcacaaataacataccaaaacagcaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)