Query= MSMg01no175_e20.b1 MSMg01no175_e20.b1 CHROMAT_FILE:
MSMg01no175_e20.b1 PHD_FILE: MSMg01no175_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:21 2005
(309 letters)
>mm_chr5_31593092_31593800
Length = 709
Score = 567 bits (293), Expect = e-166
Identities = 302/305 (99%), Gaps = 2/305 (0%)
Strand = Plus / Minus
Query: 5 gaattccacaactccc-cttatgggcccgccctaggactcactgcgcttgcgcacgtcct 63
|||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 508 gaattccacaac-ccctcttatgggcccgccttaggactcactgcgcttgcgcacgtcct 450
Query: 64 gttcgctccgtcgcgaacccactacgtgaccttatgacgtatgtcgcactcacgttgcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gttcgctccgtcgcgaacccactacgtgaccttatgacgtatgtcgcactcacgttgcct 390
Query: 124 gtgcgtcagcggttagcgccgccgatgcttggcgggttgtccaggtaaccacgggagttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtgcgtcagcggttagcgccgccgatgcttggcgggttgtccaggtaaccacgggagttg 330
Query: 184 tctcggtcagtgagcatccgagaccggtgtacgtcatgcagttgaagcacctgaggaccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctcggtcagtgagcatccgagaccggtgtacgtcatgcagttgaagcacctgaggaccc 270
Query: 244 tgctgagccctcaggtgaggaatcgcatgcctcttccattcccaggccaccaggcgttca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgctgagccctcaggtgaggaatcgcatgcctcttccattcccaggccaccaggcgttca 210
Query: 304 aaaaa 308
|||||
Sbjct: 209 aaaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_e20.g1 MSMg01no175_e20.g1 CHROMAT_FILE:
MSMg01no175_e20.g1 PHD_FILE: MSMg01no175_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:21 2005
(282 letters)
>mm_chr5_31499769_31500450
Length = 682
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 1 agcctgacccctattcctcttctaggtgccactccctagtggggccacgagcagtccaag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agcctgacccctattcctcttctaggtgccactccctagtgggggcacgagcagtccaag 260
Query: 61 ccggggtcggggtgaggttcgcctggaactggcttttgaatacctcatgagcaaggaccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggggtcggggtgaggttcgcctggaactggcttttgaatacctcatgagcaaggaccg 320
Query: 121 gctacagtgggtcaccatcaccagcccacaggtatgagcccaccctcagagctcttatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctacagtgggtcaccatcaccagcccacaggtatgagcccaccctcagagctcttatga 380
Query: 181 agccctcaggtccccaagtgggagtccgtgttgtagacctgggtggggatgacttctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccctcaggtccccaagtgggagtccgtgttgtagacctgggtggggatgacttctctt 440
Query: 241 cagactgagtcaccttcttgcccttaggctatcatgatgagc 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagactgagtcaccttcttgcccttaggctatcatgatgagc 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
