GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTTAAATCTGTAAGCCATTTTTAATTGAGTTATTTTGTT
TGATGATGTCTAGTTTCTTGAGTTTCATATATATTCTAGATGTCAGTGCT
CTCTTGGATGTGGAGCTGATGAAGATATTTTCCCATTCTGTAGGCTGCTG
TTTTGTCCTTTTGATGGTGTCCTTTCCCTTACAGAGCACTTCAGCATCAT
GAGATCCCATTTATTAATTGTTGATCTTAGTGCCTGAACTATTGGTGTTC
TGTTCATAAAGTGGCATCCCGTGTCAATGCATTCAAGGCCATCCCCCACT
TTCTCTTCTTTTATATTTACCGCATCTCGCCTTTATGTGGAGGTCATTAA
TCCACTTAGATTTGCGTCCCGCCGCAAGGTGATAGATATGGATACATTTG
CATTCTTCTACATTGAAAACATCCAGGTAGACTAGCAACCTTTGTTGAAT
GTGCTTTCATTGTTCCATTGTATAATTTTCCATTCTTTGCCAAAATTTAA
ATGTCTATAGGTGTGTGGTTTTACTTCTGGTTCTTTAGTTCAATTTGATT
GATCAACATGTATCACTTATGTTAGTACCATGTTGCTTTTATTACTACTG
CTGTTTTATTACAACTTGAAATCAGGAATGATGATACCTCAAGAAGTTCA
TTTATTGCATAGAATTATTTTA

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAATAGACCTGGATAGATCCTCACC
ACTGAACAGCACTTAATATTGCACCTAGCATACTTCCAGATGTTATCCAA
GGGATGAAAACAATGAAGATACTCTTTTCTTTCAAGAAGCTTTCTATTGT
GGGTAAAGGAGTAGTTTGTAGCCACAAAATGGCTAGTGGCTTAAGGAGAG
ATGATGGCTGCTTTCCCCATGGCACCAATTTGTGTGACTTAAGAGCCCCT
ATAAGGGGTCTTTCTCTAAAGAAGAGTTGGTTCTCAGAGAGATTTGGCAG
TTGCAGTATCAGATGTAGGAACGTCTAGCAAGTGAGAATCAATCAATCTC
ATTCTATGTGGCTTACACCAATTAAAATCCAAAATCAAGTATAGAAGGCT
CTGGAGTCTCTGCACTTCTTTCTGACTGCATTTTCGGTTCTATGAAGTGG
ACATGGCCGCCCTTACCATGGAAACGAGTTTCCTGAAGTTCTCAGGGCAT
TTATGTCCCTTGTCTCAGGTAGTCAGAGTTTCCTTTGCAGAACTGAGACC
TGAGGCAGGGGGCTGAAGGCAGCAGCACTTTAGGGGCTGCTAGGGGGAAG
CCTGGATTCTTACAGTCTCACTTAGAGAAATGATACTCCCTGTCTGGCCA
TATTCTTGTTTTCCCACTTCTATCCTCAGGAG

Query= MSMg01no175_k03.g1 MSMg01no175_k03.g1 CHROMAT_FILE:
MSMg01no175_k03.g1 PHD_FILE: MSMg01no175_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:45 2005
         (594 letters)



>mm_chr5_41800838_41801831
          Length = 994

 Score = 1087 bits (562), Expect = 0.0
 Identities = 586/594 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaatagacctggatagatcctcaccactgaacagcacttaatattgcacctagcatac 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 794 actaatagacctggatagatcctcaccactgaacagcacttaacattgcacctagcatac 735

                                                                       
Query: 61  ttccagatgttatccaagggatgaaaacaatgaagatactcttttctttcaagaagcttt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttccagatgttatcgaagggatgaaaacaatgaagatactcttttctttcaagaagcttt 675

                                                                       
Query: 121 ctattgtgggtaaaggagtagtttgtagccacaaaatggctagtggcttaaggagagatg 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctattgtgggtaaagaagtagtttgtagccacaaaatggctagtggcttaaggagagatg 615

                                                                       
Query: 181 atggctgctttccccatggcaccaatttgtgtgacttaagagcccctataaggggtcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atggctgctttccccatggcaccaatttgtgtgacttaagagcccctataaggggtcttt 555

                                                                       
Query: 241 ctctaaagaagagttggttctcagagagatttggcagttgcagtatcagatgtaggaacg 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 554 ctctaaagaagagttggttctcagagagatttggcagttgcagcatcagatgtaggaacg 495

                                                                       
Query: 301 tctagcaagtgagaatcaatcaatctcattctatgtggcttacaccaattaaaatccaaa 360
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 494 tctagcaagtgagaatcaatcaatctcattccatgtggcttaaaccaattaaaatccaaa 435

                                                                       
Query: 361 atcaagtatagaaggctctggagtctctgcacttctttctgactgcattttcggttctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atcaagtatagaaggctctggagtctctgcacttctttctgactgcattttcggttctat 375

                                                                       
Query: 421 gaagtggacatggccgcccttaccatggaaacgagtttcctgaagttctcagggcattta 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaagtggacatggccgtccttaccatggaaacgagtttcctgaagttctcagggcattta 315

                                                                       
Query: 481 tgtcccttgtctcaggtagtcagagtttcctttgcagaactgagacctgaggcagggggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 tgtcccttgtctcaggtagtcagagtttcctttgcagaactgagacctgaggcggggggc 255

                                                                 
Query: 541 tgaaggcagcagcactttaggggctgctagggggaagcctggattcttacagtc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgaaggcagcagcactttaggggctgctagggggaagcctggattcttacagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)