BAC Information

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BAC

Clone NameMSMg01-176H10
Chromosome5 (Build37)
Map Location 82,689,125 - 82,689,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176H10.T7 (MSMg01no176_h10.b1)MSMg01-176H10.TJ (MSMg01no176_h10.g1)
ACCAG371155AG371156
length1,3111,226
length of high quality
(start - end)
329 (126 - 454)556 (127 - 682)
definitionCHROMAT_FILE: MSMg01no176_h10.b1 PHD_FILE: MSMg01no176_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:14 2005CHROMAT_FILE: MSMg01no176_h10.g1 PHD_FILE: MSMg01no176_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGCCACTGCGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TCCATGAGGAACACCGAATGTCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCTTCAAGAAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAGATCATAAATTCCGGTGACAGCACATGCT
GGCGTGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGTGGGATTGC
AGGCTTATACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGGAAATT
GGACATAGTACTACCGGAGGATCCATCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
TCTTTCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTC
ATTTTTTTTTTGCCCCCCAAAAGGTGGTACCTCTACACAAAGAGAGAAGT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATA
CCCAAGATATAAGATACAATTTCCTAAATACATGAAACTCAAGAAAAATG
AAGAGTGAAGTGCGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACA
CCCTTGGAAGGAGTTACAGAGACTAAGTTTGTAGCTGAGATGAAAGGATG
GTCCCATGTAGAGACTTCCCTATCCAGGGATCCACCCCTTAATCAGCATC
CAAATGCTTACCCCATTGCATACCCTAGCCAGATTTTATTGAAAGGACCC
AGATGTTACTGTCCCTTGTGAAACTATGCTTGTGCCTATCAAACACCTAA
GTGGATGCTCCCAGTCCCCTTATGGATGTATCACAGGGCTTCCCATTGTA
AGACCCAGAAAAATTACCCAAGGAACTTAAGGGTATCTGCATCCGCTATA
GGCCGAAACCACTTTTTTGATTTAACCCTGTACCCTTGCAAGCTCTTGAC
TTCTTATTTGCCTTGGTTCTCAAAAAAGGCCCCTACCCTCCCCCTCCCTG
GTATAAAAAAGCTCCCTTGTGACCCCGCATCTCTTCCTATCCCTCTCTCC
ACGGCTACATCCCGTGTCTCATAATTGTGAAAGGTCTGGTCTTACTCTAT
TCTCTCTTCTCCCTTCTCTATTTCACCCTTCTCACTACTTTCTCTCTCTG
TTTCNTTCCTC
NNNCCCACACACTGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTAAAAATCCCCGACTTTTTGTTTAATAT
GGTAATGTATACTATTTATGACTCCCCTGCTGGTTCTATTTGAAACAATA
GTTTATGAACTTTCTGTCCAATGCTTATTTGGCTTTTTCATACTCTGTCC
CTTTTACAAATTTGTGGTTATTCCCATTTCCATTTGGCTGAAGTAATAGG
TTAGGGTGTTATTTTAAACTTTAGCTAATCACCAAAAAGAATGCTTCTTG
GTGTGTTGTTGTTGTTGTTGTTTTACCAAGAAAAGTAAATTGGAAGTATG
TGAATCCAAAAAAAGGAAAGGACTACTTTTTTGGCTTATGCTGATCAAAA
CATTATTATTTGATTGCTGTTTTTAAACTAATGAAAATACATTCAGAATC
TGTAAAATTGGGAATGATTATATGGTAAGCCCAAATTCTTTCTCTGCTTA
CTATATTACTTCTATTTAAATTCAATAAGTTTTTCTTGCCTTACCTCACC
CTCTTAAATTTCAGAATGCTTTCAAGTTCAGTAGTGTTCCAAGAGAGGTC
ATGTGACAACTGAACAAAAGGGGCAGCCTTGATGTCAGTCTGCATTGCTT
GTGGATCCTGCTTCCTGGTAGAAGTACTTTCAGCAGCTGGCACTCAACAA
GTGATCAGACCACACAATGCTAATTTTGTTGTTGGTGCTGCTGCTGCTAC
TGTTGCTGTTTTGTTGCTGCCCATCATTTCTCTCCCTCCTCCTATATCCT
TTCTTTTCTCTTCTTCTCCTTCTTATCTTCCTTTTCTTCTTCTTTTCCTC
ATCTCCTCTCCTTCTTTTTCTCTCCCTCCTCCTTCTTCTCTTCCCTTTAC
TCTTTTCCCTTCTTTCCTCTTTCATTCTCCTTTTTTCTCTTTCTTCATCT
CTTATTCTCCCCACTTTCTCCATTCTTTCTTTACTTTCTCCTCTCTTCTC
TCCTCCTTCTTCTTCTCTTCCCTTCCCTTCTCTCATTTTCCTCTCTCTTT
CTTTTTCATCTTCCTCCCTCACTCTTTCTCTTTCTCTCTTCCCTTCCTCT
CTTTCCACTCCCCTCCCTCATTGCCTCTTTAAATACTCCTCTCCCTTTCT
CCTCACATCCCTACATCTCTTCCACTCCCCACATCCACTTTACTCACTAA
CGCCTTTACCTCTTTCTTCCCGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_h10.g1 MSMg01no176_h10.g1 CHROMAT_FILE:
MSMg01no176_h10.g1 PHD_FILE: MSMg01no176_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:15 2005
         (556 letters)



>mm_chr5_82688925_82689888
          Length = 964

 Score =  957 bits (495), Expect = 0.0
 Identities = 545/565 (96%), Gaps = 10/565 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctggttctatttgaaacaatagtttatgaactttctgtccaatgcttatttggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctgctggttctatttgaaacaatagtttatgaactttctgtccaatgcttatttggcttt 705

                                                                       
Query: 61  ttcatactctgtcccttttacaaatttgtggttattcccatttccatttggctgaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 704 ttcatactctgtcccttttacaaatttgtggttattcccatttccatttagctgaagtaa 645

                                                                       
Query: 121 taggttagggtgttattttaaactttagctaatcaccaaaaagaatgcttcttggtgtgt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tagtttagggtgttattttaaactttagctaatcaccaaaaagaatgcttcttggtgtgt 585

                                                                       
Query: 181 tgttgttg---ttgttgttttaccaagaaaagtaaattggaagtatgtgaatcc---aaa 234
           ||||||||   |||||||| ||||||||||||||||||||||||||||||||||   |||
Sbjct: 584 tgttgttgttattgttgttctaccaagaaaagtaaattggaagtatgtgaatccaaaaaa 525

                                                                       
Query: 235 aaaaggaaaggactac--ttttttggcttatgctgatcaaaacattattatttgattgct 292
           ||||||||||||| ||  |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 524 aaaaggaaaggacaacttttttttggcttatgttgatcaaaacattaatatttgattgct 465

                                                                       
Query: 293 gtttttaaactaatgaaaatacattcagaatctgtaaaattgggaatgattatatggtaa 352
           ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 464 gttttgaaacaaatgaaaatacattcagaatctgtaaatttgggaatgattatatggtaa 405

                                                                       
Query: 353 gcccaaattctttctctgcttactatattacttctatttaaattc-aataagtttttctt 411
           ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 404 gcccaaattctttctttgcttactatattacttctatttaaattcaaat-agtttttctt 346

                                                                       
Query: 412 gccttacctcaccctcttaaatttcagaatgctttcaagttcagtagtgttccaagagag 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gccttacctcaccctcttaaatttcagaatgctttcaagttcagtagtgttccaagagag 286

                                                                       
Query: 472 gtcatgtgacaactgaacaaaaggggcagccttgatgtcagtctgcattgcttgtggatc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtcatgtgacaactgaacaaaaggggcagccttgatgtcagtctgcattgcttgtggatc 226

                                    
Query: 532 ctgcttcctggtagaagtactttca 556
           |||||||||||||||||||||||||
Sbjct: 225 ctgcttcctggtagaagtactttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 964
Length adjustment: 10
Effective length of query: 546
Effective length of database: 954
Effective search space:   520884
Effective search space used:   520884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)