BAC Information

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BAC

Clone NameMSMg01-176J16
Chromosome5 (Build37)
Map Location 34,105,185 - 34,126,749
singlet/doubletdoublet
Overlap geneLetm1
Upstream genePisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, LOC100040332
Downstream geneWhsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176J16.T7 (MSMg01no176_j16.b1)MSMg01-176J16.TJ (MSMg01no176_j16.g1)
ACCAG371253AG371254
length1,2651,325
length of high quality
(start - end)		745 (38 - 782)520 (76 - 595)
definitionCHROMAT_FILE: MSMg01no176_j16.b1 PHD_FILE: MSMg01no176_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:33 2005CHROMAT_FILE: MSMg01no176_j16.g1 PHD_FILE: MSMg01no176_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,126,294 - 34,126,749)(34,105,185 - 34,105,628)
sequence
CAGTTTTNNNNNGGCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCATTGTTTTTAATAGCTGCGTATTACTCCATTGTGTAAATGTAC
CACATTTTCTGTATCCATTCCTCTGTTGAGAACATCTGGGTTCTTTCCAG
CTCCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC
CTTATTGCATGTTGGATCATCTTCTGGGTATATGACCAGGAGTGGTATAG
CTGGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAAACT
GATTTCCAGAGTGGTTGTACAAACTTGCAATTCCACCAGCAATGGAGGAG
TGTTCCTCTTTCTCCACACCCTCACCAGCATCTGCTGTCACCTGAGGTTT
TGATCTTATCCATTCTGACTGGTGTAAGGTGGAATCTCAGGGTTGTTTTG
ATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTCTTTAGGTGCTT
CTCAGCCATTCGGTATTCCTCAGTTGTCATTACTACTTTGGCTTGGCTTT
GCTTTCCTCCTCCTCCTCCTCTTTGGTCAGGCAAGTGTTCTTATTGGTGG
AAGTTTCTCAGCTTGGCTAAGAAACTTCAGTTCTTTGGTTTAGGTCATCA
GCCCTTTCAGGGAATACCTATACTTGACTTAATTCTGTATCTGATGCCCA
CAATGTACATTACCGTGTGCACAAGAGAGGTTCCAAACGTCTTAGGAGAT
TCTCTGCCACCTGAGTCCTGAGATAGGGATTCTGGTCTACACTGGCCCAG
CTTTTAGGTTCTGATTCAGAAAATGACCAGATAGGTTACTTCTTCCCAAT
GGGCTGTGCTGGGATACTAGTGAAGCGTCCTCGCTGGGAACCCGCTGGAA
TTTAGACTTTGACACCTGTTCTTCACAAAAAAAAAAAAATGCATTAACCC
CCTACTGAAGATCTTCCCCTACTATTTTGAGTTCCCTCCCACGGAACCGT
AAAAGGAACGTAAAGGCTTTTCTCCAAAGTCTGTAGTTGTAAAGTATTGC
TCGAAATTCCCCTGAAACGCCCTGTTGTCCCTGGTTTCAGAATATAAATC
GGTGATCAAACTTTTCTCCCGTTCATCCCCTAAGTTGTTATATTCCTGGG
TTTTCCCATCTTTCTAAACCTTTTTTTCTTTCTCCTACTCTTTACATAAC
ATAGACCTTCTCTCCTCTCTTTTATATACTTTCTTCAGCTTCTTTTTTCT
CTCATATATCTTTTC

CTATTTTNTNNNAAAGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGAAGGGCACCACCACGAAC
ACCAGGAAGGGCACTAGACTTAAGAGGTCCGCACAAATCCGGAGAAACTG
CAAAGATGTGGGTTCATGAGCAGTGACAGAGCAGGCAGAGGTATTTCTCC
CACCCTCACTACAAACTGAGCAACATGGTGAGGTGACTCGAGAGCTCTTG
GCAGATACTTCAGAAACCTATTTCTCTCTTAGAATCCAAACTGCATGCCA
ATGGCCTTCAATAAAAGGGATAGGTACTAACTTACAGGTCACCAGATACA
CAGAGCATGAAATAAACAAAACAGGCTCAAAAGAAGACAATTTAGATAAG
ATAACAATCTTCGAAAGATGTCTTGGACCACCCCCTACAAGTAGGGGGCC
TGTGAAGTCCTTCAAATGAGTTTATAATTTTCCATAGTGGAGTCTATTAC
AGGCCATGGTCTAGACAATTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAG
GTTATATGTGTGTTTTTATTTTCTTTTTTTTTCCATTTTTTATTAANTAT
TTAGNTCATTTACATTTCCAATGCTATACCCAAAGTCCCCCATATCCACC
CACCCCCCACTCCCCTGCCCAACCTCTCCTCCTTTTTGTCCCTGCTGTTC
CCCTGATTGCCCCCATTATTTTCCTGCCCTCCCCAGTTTCCTCTCTTTCC
TCCGATGTTCCGATCATTCCATCTTTTTACTTTTCTTCCCTCTCTCTTCC
TTCTTCTCTCCTTTTCCTGCTTTCCTCTCAATGCNTCTCTCTCCTCTTTC
TTTCCACTCCTCCTTTCCTCCTTCCCTATTCTCTCTTCATCTCTCCTTTG
TTCTCTCCTCTCCTTCCTTCCTTTACTTCTCCTTTCTTTCCTTCCTCTCT
CTTCTTTTTCTCTCCTCTCCTCCCTTTTCTCCTCTCCTCTCCTTCCTTCC
TCATGTTCCCTTCTTTTTTATTCTTTTTTTTTCCTCCTCTCTCCTCTTCT
TCTCCTTTTCTTCGTCTCTTCCTTCCTCCCTTTCTTCCTCTACTTCCTCT
CTCCCTTTCTCTCTTTTCTTTTTCCCTCTTTCTACTCTTCTTCTCTCTCT
CTACTCCACATCTCTTCTCTCTTCTTTCCTCCTCTTCCTCTCTTTTTATC
TCTATACTTCATTTTCCTTCCCTCTTTTCTTCCCCTCTTCTTTCTCTCCC
CTCTCTTCTTCTTCTCGTTCCCCTCTGTCTCTAATCCTCCTCAATCCTAC
TTTCCTCNCTATCCTCTTCGTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_j16.b1 MSMg01no176_j16.b1 CHROMAT_FILE:
MSMg01no176_j16.b1 PHD_FILE: MSMg01no176_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:33 2005
         (745 letters)



>mm_chr5_34125605_34126749
          Length = 1145

 Score =  866 bits (448), Expect = 0.0
 Identities = 454/456 (99%)
 Strand = Plus / Minus

                                                                        
Query: 290  gcaattccaccagcaatggaggagtgttcctctttctccacaccctcaccagcatctgct 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 gcaattccaccagcaatggaggagtgttcctctttctccacaccctcaccagcatctgct 1086

                                                                        
Query: 350  gtcacctgaggttttgatcttatccattctgactggtgtaaggtggaatctcagggttgt 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gtcacctgaggttttgatcttatccattctgactggtgtaaggtggaatctcagggttgt 1026

                                                                        
Query: 410  tttgatttgcatttccctgatgattaaggatgttgaacatttctttaggtgcttctcagc 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 tttgatttgcatttccctgatgattaaggatgttgaacatttctttaggtgcttctcagc 966

                                                                        
Query: 470  cattcggtattcctcagttgtcattactactttggcttggctttgctttcctcctcctcc 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  cattcggtattcctcagttgtcattactactttggcttggctttgctttcctcctcctcc 906

                                                                        
Query: 530  tcctctttggtcaggcaagtgttcttattggtggaagtttctcagcttggctaagaaact 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  tcctctttggtcaggcaagtgttcttattggtggaagtttctcagcttggctaagaaact 846

                                                                        
Query: 590  tcagttctttggtttaggtcatcagccctttcagggaatacctatacttgacttaattct 649
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 845  tcagttctttggtttaggtcatcagccctttcagggaatccctacacttgacttaattct 786

                                                                        
Query: 650  gtatctgatgcccacaatgtacattaccgtgtgcacaagagaggttccaaacgtcttagg 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  gtatctgatgcccacaatgtacattaccgtgtgcacaagagaggttccaaacgtcttagg 726

                                                
Query: 710  agattctctgccacctgagtcctgagatagggattc 745
            ||||||||||||||||||||||||||||||||||||
Sbjct: 725  agattctctgccacctgagtcctgagatagggattc 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1145
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1135
Effective search space:   834225
Effective search space used:   834225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no176_j16.g1 MSMg01no176_j16.g1 CHROMAT_FILE:
MSMg01no176_j16.g1 PHD_FILE: MSMg01no176_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:34 2005
         (520 letters)



>mm_chr5_34104980_34105899
          Length = 920

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   tgaagggcaccaccacgaacaccaggaagggcactagacttaagaggtccgcacaaatcc 65
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 206 tgaagggcaccaccacgaacaccaggaagggcactagacggaagaggtccgcacaaatcc 265

                                                                       
Query: 66  ggagaaactgcaaagatgtgggttcatgagcagtgacagagcaggcagaggtatttctcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggagaaactgcaaagatgtgggttcatgagcagtgacagagcaggcagaggtatttctcc 325

                                                                       
Query: 126 caccctcactacaaactgagcaacatggtgaggtgactcgagagctcttggcagatactt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caccctcactacaaactgagcaacatggtgaggtgactcgagagctcttggcagatactt 385

                                                                       
Query: 186 cagaaacctatttctctcttagaatccaaactgcatgccaatggccttcaataaaaggga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cagaaacctatttctctcttagaatccaaactgcatgccaatggccttcaataaaaggga 445

                                                                       
Query: 246 taggtactaacttacaggtcaccagatacacagagcatgaaataaacaaaacaggctcaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taggtactaacttacaggtcaccagatacacagagcatgaaataaacaaaacaggctcaa 505

                                                                       
Query: 306 aagaagacaatttagataagataacaatcttcgaaagatgtcttggaccaccccctacaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaagacaatttagataagataacaatcttcgaaagatgtcttggaccaccccctacaa 565

                                                                       
Query: 366 gtagggggcctgtgaagtccttcaaatgagtttataattttccatagtggagtctattac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtagggggcctgtgaagtccttcaaatgagtttataattttccatagtggagtctattac 625

                                   
Query: 426 aggccatggtctagacaatttctt 449
           ||||||||||||||||||||||||
Sbjct: 626 aggccatggtctagacaatttctt 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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