Query= MSMg01no177_f04.b1 MSMg01no177_f04.b1 CHROMAT_FILE:
MSMg01no177_f04.b1 PHD_FILE: MSMg01no177_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:52 2005
(682 letters)
>mm_chr5_34941368_34942450
Length = 1083
Score = 513 bits (265), Expect = e-149
Identities = 280/285 (98%)
Strand = Plus / Plus
Query: 398 aataggaaaaaaaaatcaactctctggtttttgctctgtttactgctatagctggcaatg 457
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 390 aataggaaaaaaaaatcaactctctagtttttgctctgtttactgctgtagctggcaatg 449
Query: 458 ggacctgggaggatggagccgataaatgaggcagactagagtctcatgcagtagccagta 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggacctgggaggatggagccgataaatgaggcagactagagtctcatgcagtagccagta 509
Query: 518 gacatttatttagagcattggacaatttatcctctgagggtaagaggtgtcatatcagta 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gacatttatttagagcattggacaatttatcctctgagggtaagaggtgtcatatcagta 569
Query: 578 aagtctgcaatcacaagggaaagttgcaagaggcaaaaatgtttttccaaagaagcagtt 637
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 570 aagtctgcaatcacaagggaaagttgcaaaagggaaaaatgtttttccaaagaagcagtt 629
Query: 638 tacaatagccacttgtaatgcataatctgaaacaaatttctgtcg 682
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 630 tacaatagccacttgtaatgcataatctgaaacaaaattctgtcg 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_f04.g1 MSMg01no177_f04.g1 CHROMAT_FILE:
MSMg01no177_f04.g1 PHD_FILE: MSMg01no177_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:52 2005
(604 letters)
>mm_chr5_35102288_35103291
Length = 1004
Score = 1058 bits (547), Expect = 0.0
Identities = 576/601 (95%), Gaps = 24/601 (3%)
Strand = Plus / Minus
Query: 4 tcagcatgggctgtatcagaacttgtctcaaaagaaaaaggaaaaggaaaaagccaagca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 tcagcatgggctgtatcagaacttgtctcaaaagaaaaaggaaaaggaaaaagccaagca 945
Query: 64 gtgatagaacacacctttaatctcagcagtctggaggcagaggcaggcagatctctgagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 gtgatagaacacacctttaatctcagcagtctggaggcagaggcaggcagatctctgagt 885
Query: 124 tataggtcagcctgttctacaaagtgagttccaggacagccagagctacatagaaaccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tataggtcagcctgttctacaaagtgagttccaggacagccagagctacatagaaaccct 825
Query: 184 gtctcaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaccgttccggcttcag 243
|||| ||||||||||||||||||||||||||||||||
Sbjct: 824 gtct------------------------caaacaaacaaacaaaaccgttccggcttcag 789
Query: 244 aaaaagctgtctggaggtgatccatgcagtgagaaacccaatgaagcttcaggctacctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaaaagctgtctggaggtgatccatgcagtgagaaacccaatgaagcttcaggctacctg 729
Query: 304 taagaatcaaatgccctattccatggccataaggcactccattttctcgaaatggccaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 taagaatcaaatgccctattccatggccataaggcactccattttctcgaaatggccaag 669
Query: 364 tatacagaaaccaacactgttactgtaggggtataagcccgccgctgttaaactgggaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tatacagaaaccaacactgttactgtaggggtataagcccgccgctgttaaactgggaag 609
Query: 424 gagagcagagaaacagcctttagattctatgtcccctctgttactaatggcactattaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gagagcagagaaacagcctttagattctatgtcccctctgttactaatggcactattaga 549
Query: 484 tgcacagtgccagtgctagctctcacatgaggcagcctctaacagctggccagggttggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgcacagtgccagtgctagctctcacatgaggcagcctctaacagctggccagggttggt 489
Query: 544 agttgctagtacgcagacttggaagaaggcccagtgagccctgtctcttagcattctcta 603
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agttgctagtaggcagacttggaagaaggcccagtgagccctgtctcttagcattctcta 429
Query: 604 g 604
|
Sbjct: 428 g 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
