BAC Information

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BAC

Clone NameMSMg01-177G08
Chromosome5 (Build37)
Map Location 89,103,778 - 89,104,183
singlet/doubletsinglet
Overlap geneGrsf1
Upstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
Downstream geneMobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177G08.T7 (MSMg01no177_g08.b1)MSMg01-177G08.TJ (MSMg01no177_g08.g1)
ACCAG371798AG371799
length716753
length of high quality
(start - end)
404 (73 - 476)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no177_g08.b1 PHD_FILE: MSMg01no177_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:58 2005CHROMAT_FILE: MSMg01no177_g08.g1 PHD_FILE: MSMg01no177_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAAAAAGAGGATCCGCG
GAATTCCATATTCCCTCTTTACAAATAAATAAGTAAATAAATAAATAAAT
AGTGCAGCAGAAAGTATTGGGCCGGGATTCAAATCAATTAGCTCAGCTAC
TGGCAGACATCAGCCATGCAGATGAACCACCCAGATATCACTAATTCAAG
CAGACGCAAAACTAAATTAAGATAAACATGGCCAGTGGCGTTACCAGGTT
AGGTAGACACTTCCCAGATGCCACATAAACCGCAAAAGAGAAATGTCCCA
CATATACAGAGGACCAAATATTTGCAATATGAATTCTTACAATGTCTTTC
TGAAAAGACGGGACACAAGGGAAAAGATCGTGGAGTGACAACCGAAGCCC
CCAAGTCCTCACCCACGGACGCCCCCGCCCCACACACACGTTCTCTCCCA
GTTTCCCACGGTCTCCCCACAGCTCTCCGCGTCCGTAGAGCCCCGCTGCA
CCAAAGGTCCTTCTGTCAAGGCGAGCGGACTTGCAGAGGTGACCTTCAGT
CAAGTGGGTCGCCCGTCCCTCCCCGCGGACAAGGGACAGGGACGCGCGGG
GGCTGTCCTTAGACTAGCCTGCGCTCCCGTGTGCGCAGTGCTGCACGTCG
TTGGCCTGCGCCAGGAAGTCCCAGCCGCCCGGCGTACCGCTTCCATCGCC
CGTATGGTCGGCCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAGTCTCACATGAATTTGGG
CTGTTTTCTCCCGTTATTCACTTATTCTTGGTATTAAAAGTCACTGTGAG
AGGATGTGCCTAGCCCTGCAGTGACTAAGGTGGGGGAATATCCAGGGGAG
CCTCCCCTTCTCAGGGGAATACAGGTAGAAACTGTGTGAGGGAGGCACTG
GGAGGCTGATACTGGGATGTAAAGTGAATAAATTAATGAATGAATGAAAA
GCTTAAAAAAAAAGGGTCTCCCACTGTTACACTGGAGCCTAAATATCCTT
TTTATGTCTATCAACGCCCCCCCCCCCAACTAGGTACTAGTCTAACACTT
GGCATATAAATTTACATCTCTCTCTCTCCATATATGTGTGGGGGGGTGCG
TTCCTCTCTCTTTCTCCTTCCCTTCTCCTTTTATCCCCGCCCCCTATTTC
CTTTTTATTTTTCTTTTTCTTTTTTTTCCCCTATTTTTTTTCTTCCTCTA
ATTATTTACCCATCCCACCCGTCCCCTTCCTTCTATTTTATTACCCTCTC
CCTCTCACCCAATATTTATTTCTTCCTAGCTCTCATTCCTATTTTTTTAC
TTTCTCACAACCACCATTTTCCTATCACCTATTTTATACCTATATTAACC
AATAAATTTTAATATCAATTATAATACTAATATAAATAACCACATTATAA
ACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_g08.b1 MSMg01no177_g08.b1 CHROMAT_FILE:
MSMg01no177_g08.b1 PHD_FILE: MSMg01no177_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:58 2005
         (404 letters)



>mm_chr5_89103578_89104383
          Length = 806

 Score =  766 bits (396), Expect = 0.0
 Identities = 403/406 (99%), Gaps = 2/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaataagtaaataaataaataaatagtgcagcagaaagtattgggccgggattcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaataagtaaataaataaataaatagtgcagcagaaagtattgggccgggattcaa 260

                                                                       
Query: 61  atcaattagctcagctactggcagacatcagccatgcagatgaaccacccagatatcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaattagctcagctactggcagacatcagccatgcagatgaaccacccagatatcact 320

                                                                       
Query: 121 aattcaagcagacgcaaaactaaattaagataaacatggccagtggcgttaccaggttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcaagcagacgcaaaactaaattaagataaacatggccagtggcgttaccaggttag 380

                                                                       
Query: 181 gtagacacttcccagatgccacataaaccgcaaaagagaaatgtcccacatatacagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagacacttcccagatgccacataaaccgcaaaagagaaatgtcccacatatacagagg 440

                                                                       
Query: 241 accaaatatttgcaatatgaattcttacaatgtctttctgaaaagacgggacacaaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 accaaatatttgcaatatgaattcttacaatgtctttctgaaaagacgggaaacaaggga 500

                                                                       
Query: 301 aaagatcgtggagtgacaaccgaagcccccaagtcctcacccacggacgcccccgcccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagatcgtggagtgacaaccgaagcccccaagtcctcacccacggacgcccccgcccca 560

                                                         
Query: 361 cacacac--gttctctcccagtttcccacggtctccccacagctct 404
           |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacacacgttctctcccagtttcccacggtctccccacagctct 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 806
Length adjustment: 9
Effective length of query: 395
Effective length of database: 797
Effective search space:   314815
Effective search space used:   314815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)