BAC Information

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BAC

Clone NameMSMg01-177H07
Chromosome5 (Build37)
Map Location 3,317,023 - 3,317,572
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726
Downstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H07.T7 (MSMg01no177_h07.b1)MSMg01-177H07.TJ (MSMg01no177_h07.g1)
ACCAG371841AG371842
length707715
length of high quality
(start - end)
638 (70 - 707)538 (77 - 614)
definitionCHROMAT_FILE: MSMg01no177_h07.b1 PHD_FILE: MSMg01no177_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:02 2005CHROMAT_FILE: MSMg01no177_h07.g1 PHD_FILE: MSMg01no177_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCTGCAATTACAATGTGCTCTTCTGTGAGTCTAGGTGCAATGTTTAA
TCTCATTGGCATGGACAAGGGAGAACTTTGAGGATGCTTTCAAAAAATAT
TGCTCCCCAAGCAAGAATAGTGGCTCACACCTGTAGTCCTAGGCTGAGGC
AGGAGGATTGCTGTGAGTTTAAGCCTGGGCTACCTGAGTTCTGGGCCAGC
TTCATAAGAGTAAGACCTGGTTTAAGAACAAAAAAGGTAATACTTCCACT
CTAAAAGGTGAATGCCTACTATCTCACACACGTGACAGTAATAAGTGAAT
AATTCTAAATTACTCTCAACATATAAATTCTGAACAACATTTATATCTTT
GTAGATGAGATATTTCTGCAACAGAACTCTCAGGCAAAGGTGTTGTTTGG
ACAATGAGAACCGCCTACGGACACCTACATTTTTTTCCTCTTTAAAAAAA
TGTGTATTTTGAGTTTTGAACTAATAGTCCAATAAAATGTTTTGTTAAAA
AGCTGATTATACACATCACCAGGGCTCAGATTTGTGTTCCTTGAAACACC
AAACTTTTTAAAGCAACAAAATGGACTAGAATGGCAGAGTCATACAAAAC
CAAAGTAGCTGAACTCTGCTCTTCATTGACCCACTATGCCTTGTCTAACG
AGGCTAG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAATTTGCAATTTTTTATGCAT
ATACAGCTCATTAAGAAAATGCTGTTCAATTAAGAAGACTGTTTTTGGAA
ATTTAAGAATTTGTTCTAGATTGCCTGGACAAGACCTCTTAAGGCAATGC
CATGCTAGACTTATATCCCAGGCAGATTATAAACCGTATACAAAAATAAT
TGGCCATATAACCTAATTTCTTTACATCATTAAAATAGTAATGGCTTAAG
ATAATATTTTGGTATTTTTAGAAAATGTGCATGTCAAATTGTAGAAATTT
GTTCTCAGTGTCCTCAGTTTCTACCTGTTTCCACATAATGGCATTAATTC
TTGAGGACTTACACTTAATCAATTGCTACTCTTATTTCTGATTAATAAAT
AAATAAAATGTGCACATGTGCCTATTTAATACTTTTCAGGCTTTCTAGTC
ATGAAAAGGATCCACTTATTGGCACATGGCATGATCCTGAAGAGAAAGTT
TAATATGGGAAAGAGAGGGAGTGTTTCTGTTTTTTCCTCCTAATGCTACC
GGATTATGCTAGCTTTCCAAATGATTCGTTGTGACACCCTGACTTGTGAC
TCCCCTGATGCCCTGACAGCGAAAAGCCCCTTTGAGCGCTCCGAGTAAGA
GGATTCCGCAGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h07.b1 MSMg01no177_h07.b1 CHROMAT_FILE:
MSMg01no177_h07.b1 PHD_FILE: MSMg01no177_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:02 2005
         (638 letters)



>mm_chr5_3316833_3317870
          Length = 1038

 Score =  959 bits (496), Expect = 0.0
 Identities = 532/550 (96%), Gaps = 10/550 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcttctgtgagtctaggtgcaatgtttaatctcattggcatggacaagggagaacttt 60
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 191 gctcttctgtgagtccaggtgcaatgtttaatctcattggtatggacaagggagaacttt 250

                                                                       
Query: 61  gaggatgctttcaaaaaatattgctccccaagcaagaatagtggctcacacctgtagtcc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gaggacgctttcaaaaaatattgctccccaagcaagaatagtggctcacacctgtagtcc 310

                                                                       
Query: 121 taggctgaggcaggaggattgctgtgagtttaagcctgggctacctgagttctgggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 taggctgaggcaggaggattgctgtgagtttaagcctgggctacctgagttctgggccag 370

                                                                       
Query: 181 cttcataagagtaagacctggtttaagaaca----------aaaaaggtaatacttccac 230
           |||||||||||||||||||||||||||||||          |||||||||||||||||||
Sbjct: 371 cttcataagagtaagacctggtttaagaacagaaccaaacaaaaaaggtaatacttccac 430

                                                                       
Query: 231 tctaaaaggtgaatgcctactatctcacacacgtgacagtaataagtgaataattctaaa 290
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctaaaaggtgaatgcctacaatctcacacacgtgacagtaataagtgaataattctaaa 490

                                                                       
Query: 291 ttactctcaacatataaattctgaacaacatttatatctttgtagatgagatatttctgc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttactctcaacatataaattctgaacaacatttatatctttgtagatgagatatttctgc 550

                                                                       
Query: 351 aacagaactctcaggcaaaggtgttgtttggacaatgagaaccgcctacggacacctaca 410
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 551 aacagaactctcaggcaaaggtggtgtttggacaatgagaaccgcctacggacacctaca 610

                                                                       
Query: 411 tttttttcctctttaaaaaaatgtgtattttgagttttgaactaatagtccaataaaatg 470
           ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 611 tttttctcctctttaaaaaaatgtgtattttgagttttgaattaatagtccaataaaacg 670

                                                                       
Query: 471 ttttgttaaaaagctgattatacacatcaccagggctcagatttgtgttccttgaaacac 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttttgttaaaaagctgattatacacatcaccagggctcagatttgtgttccttgaaacac 730

                     
Query: 531 caaacttttt 540
           ||||||||||
Sbjct: 731 caaacttttt 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)