BAC Information

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BAC

Clone NameMSMg01-178B20
Chromosome5 (Build37)
Map Location 10,464,699 - 10,464,983
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream gene9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC381612
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178B20.T7 (MSMg01no178_b20.b1)MSMg01-178B20.TJ (MSMg01no178_b20.g1)
ACCAG372300AG372301
length745738
length of high quality
(start - end)
461 (45 - 505)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no178_b20.b1 PHD_FILE: MSMg01no178_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:50 2005CHROMAT_FILE: MSMg01no178_b20.g1 PHD_FILE: MSMg01no178_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTTTTTACTAGCTGAGTAGTACTCCATTGTGTAAATGTACCAC
ATTTTCTGTATCAATTCCTCTGTTGAAGGACATCTGAGTTCTTTCCAGCT
TCTGGCTATTATAAAAAAGGCTGCTATGAACATAGTGGAGCATGCATCCT
TGTTATATGTTTAAGAATCTTTTGGGTATGTGCCCAGGAGTGGTATAACT
GGGTCCTCAGGCAGTACTATGTCCAGTTTTCTGAGGAATGGCCAGACTGA
TTTCCAGAGTGGTTGTACCAGCTTGCAATCCCACCAACAATGGAGGAGTG
TTCATCTTTCTCCACATCTGATCCAGTGATCTCCTGTCACCTGAGCTTTT
GATCTTAGCCATTCTGACTTATGTGAGGTAGAATCTCAGGGTTGTTTTGA
TTTAATGAAAGAGTAGTGTAAACAGCTTCAAGCTGTTTTTAATGATTTGT
ATAAAACAGACACTATACAGAAACACGAGACATAATATGGATAATCCTTT
ATCTATAATAATAATGTACTATAAATCAATACTCTTTCTAATTATATTTT
GCATAATTTCCCTGACTAATTTCATCCTTTTTTAAAAATAAATATGTCAT
CACTCTTCTCTTCTACGTCTAAACAATAAATGCCTAAATAGCTCTGTCCG
CGATTATAATTTCTTTAAAGGCTCGGTGGTAATGCTTTATATTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCGAAGGCAACAGTGAATGGGGGGGC
AATATTTGGAATATAAATACATAAAGTAATTTAATATTAAAGGATACTTT
TTGAAATGAATGGAAGTCATGAAAATCAGCTAGCAAAGAAACATGAGCTA
TCTCTATTAATAACCTATAATCATGTTTTCTTTCTATCTAAAGAAACAAA
GTAGAATTTAGTTGACAAACTGTGTGTATCTACTTTTTATAATCTACTTA
AAAATACTGAATGGAATTACTGATCTAAAGTTATCTTTCTTGGTTGAGTT
GTATGGTTTATCTATCACGCTGACTTTGATTTGTCTATCTGGTTGATTTT
ATCCAAGAACCAATTCTTTATTTTATTCATTCCTTGTATTGTTCTCTATG
TTTCTATTTTGTTTATTTCAGCCTTCAGTTTGAATATTTCCTGTCTACTA
CTCCTATTAAGTGTGTTCGCATCTTTTTGGTCTAGAGTTGTCAGGTATGC
TGTTAAGTCCCTATTATGACATAAAGAAAGGTATTGCTATGAACTCCTAA
TACTGCTTTCATTATGTCTCATAACCCTGGGTATGACCGCGATTTCTTTT
CTTTTGATTCTTATATAGTTTTTTTTTTTTCTCTTCAATAACCTTGATTC
ATAGTTTATCTTTAAATATATCGCTCTTTTTTCTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_b20.g1 MSMg01no178_b20.g1 CHROMAT_FILE:
MSMg01no178_b20.g1 PHD_FILE: MSMg01no178_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:50 2005
         (291 letters)



>mm_chr5_10464499_10465187
          Length = 689

 Score =  489 bits (253), Expect = e-143
 Identities = 278/287 (96%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcgaaggcaacagtgaatgggggggcaatatttggaatataaatacataaagtaattta 60
           ||||| ||||||||||||  |||||||||||||||||||||||||| ||||| |||||||
Sbjct: 485 tgcgagggcaacagtgaa--ggggggcaatatttggaatataaatagataaaataattta 428

                                                                       
Query: 61  atattaaaggatactttttgaaatgaatggaagtcatgaaaatcagctagcaaagaaaca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atattaaaggaaactttttgaaatgaatggaagtcatgaaaatcagctagcaaagaaaca 368

                                                                       
Query: 121 tgagctatctctattaataacctataatcatgttttctttctatctaaagaaacaaagta 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgagctatctccattaataacctataatcatgttttctttctatctaaagaaacaaagta 308

                                                                       
Query: 181 gaatttagttgacaaactgtgtgtatctactttttataatctacttaaaaatactgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaatttagttgacaaactgtgtgtatctactttttataatctacttaaaaatactgaatg 248

                                                          
Query: 241 gaattactgatctaaagttatctttcttggttgagttgtatggttta 287
           |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaagactgatctaaagttatctttcttggttgagttgtatggttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)