Query= MSMg01no178_i13.b1 MSMg01no178_i13.b1 CHROMAT_FILE:
MSMg01no178_i13.b1 PHD_FILE: MSMg01no178_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:21 2005
(628 letters)
>mm_chr5_47467906_47468933
Length = 1028
Score = 772 bits (399), Expect = 0.0
Identities = 420/431 (97%), Gaps = 8/431 (1%)
Strand = Plus / Minus
Query: 206 tttctgcaaaagctgatttttaattttctttttttctttgagatcataatataattacat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tttctgcaaaagctgatttttaattttctttttttctttgagatcataatataattacat 969
Query: 266 cgtatctcctttcaaatcttctatatatccattcctttgttttcttttaaattcatcacc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 cgtatctcctttcaaatcttctatatatccattcctttgttttcttttaaattcatcacc 909
Query: 326 tctcttttaaaattgctggtataaa------ctctctctctctctctctctctctcgcta 379
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 908 tctcttttaaaattgctggtataaactctctctctctctctctctctctctctctctcta 849
Query: 380 gcttg--ctctctctctctcagtactttttaaatgatgaaggaagtaccctttcttctgt 437
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 848 gcttgttctctctctctctcagtactttttaaatgatgaaggaagtacccttccttctgt 789
Query: 438 aagtttctctatttcttataatcaatgaaagaatttatatgttgtgaattcaaatcattc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aagtttctctatttcttataatcaatgaaagaatttatatgttgtgaattcaaatcattc 729
Query: 498 atgagacatatcatcatctcctattactttgtggatatctcaatagttatcattttaggt 557
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 728 atgagacatatcatcatctcctattactttgtggatatctcaatagttataattttaggt 669
Query: 558 aaaatattattttacaactaagccattttttccttttatgatacttgtcatttcacagaa 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaaatattattttacaactaagccattttttccttttatgatacttgtcatttcacagaa 609
Query: 618 ctccttctacc 628
|||||||||||
Sbjct: 608 ctccttctacc 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_i13.g1 MSMg01no178_i13.g1 CHROMAT_FILE:
MSMg01no178_i13.g1 PHD_FILE: MSMg01no178_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:21 2005
(285 letters)
>mm_chr5_47354670_47355354
Length = 685
Score = 520 bits (269), Expect = e-152
Identities = 283/291 (97%), Gaps = 6/291 (2%)
Strand = Plus / Plus
Query: 1 tttgccctagtgcctctgaatcacatggcccagaacatcccagacagatctttttcattg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgccctagtgcctctgaagcacatggcccagaacatcccagacagatctttttcattg 260
Query: 61 ttttaatttaatgattttaagaatttcatgtagtaatactatattttccatttctctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaatttaatgattttaagaatttcatgtagtaatactatattttccatttctctctg 320
Query: 121 ttttcctacccatcccatttcccgtttaatttccattcaacttcatgacatgttcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcctacccatcccatttcccgtttaatttccattcaacttcatgacatgttcttctt 380
Query: 181 taattattgttgttttacacacacaca------cacacacacacacacacacacacacac 234
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 taattattgttgttttacacacacacaaacacacacacacacacacacacacacacacac 440
Query: 235 acacacacacactctctgctgaatccaaatacatgtatgtagggctggctg 285
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacacacacactctgctgaatccaaatacatgtatgtagggctggctg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
