Query= MSMg01no179_k07.b1 MSMg01no179_k07.b1 CHROMAT_FILE:
MSMg01no179_k07.b1 PHD_FILE: MSMg01no179_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:42 2005
(465 letters)
>mm_chr5_79200630_79201494
Length = 865
Score = 839 bits (434), Expect = 0.0
Identities = 454/466 (97%), Gaps = 10/466 (2%)
Strand = Plus / Plus
Query: 5 gaattcagtgttcatgacgttcacacagaagggagaagtgaatgagagcagtggagttgg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgttcatgatgttcacacagaagggagaagtgaatgagagcagtggagttgg 264
Query: 65 taaaggtcgacacaaaaaatttaatcattagaaaagacatgtaaaatttagtctttaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaggtcgacacaaaaaatttaatcattagaaaagacatgtaaaatttagtctttaaaa 324
Query: 125 tttataaaataatggataatgctctgcaataaggaaggtatatgaagccatagcatggta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttataaaataatggataatgctctgcaataaggaaggtatatgaagccatagcatggta 384
Query: 185 ggcagtgtagagatcaatttgtagcattctttgtcaatgtgctcttgaagtttattttat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagtgtagagatcaatttgtagcattctttgtcaatgtgctcttgaagtttattttat 444
Query: 245 ctatggcaaggcaaattcatgttatgcttttaaaaataatttaattgtttatcgtcatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatggcaaggcaaattcatgttatgcttttaaaaataatttaattgtttatcgtcatgt 504
Query: 305 gtaatttgcattccatgtgattttactcacaggttatcagcaaggaaaatcaagaatgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtaatttgcattccatgtgattttactcacaggttatcagcaaggaaaatcaagaatgaa 564
Query: 365 attcctaaat-----ccccccactcatttcagtagagacaatataacgctcctctgtgtt 419
|||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 attcctaaattttgtc-----actcatttcagtagagaaaatataacgctcctctgtgtt 619
Query: 420 tcagcatctattactatcttacatagaaatttcacttgctacagag 465
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcagcatctattactatcttacatagaaatttcacttgctacagag 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_k07.g1 MSMg01no179_k07.g1 CHROMAT_FILE:
MSMg01no179_k07.g1 PHD_FILE: MSMg01no179_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:42 2005
(493 letters)
>mm_chr5_79300238_79301128
Length = 891
Score = 756 bits (391), Expect = 0.0
Identities = 404/409 (98%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 1 agataaaaggataaaatacaaattattccaatgtactatgaaggtggcacagcaggacag 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agataaaaggaaaaaatacaaattattccaatgtactatgaaggtggcacagcaggacag 348
Query: 61 gaataaaagtcagaggaagaaacttgagagcatcgagcattagtattggttatgtgtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaataaaagtcagaggaagaaacttgagagcatcgagcattagtattggttatgtgtcaa 288
Query: 121 gtcttatcgaaattctatttgagctgacatctgtaagaaaggaacattcagcatagaacc 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtc--atcgaaattctatttgagctgacatctgtaagaaaggaacattcagcatagaacc 230
Query: 181 cagagaggacaacctggagaacatcgatggctgaacaaatgaataagatagtagcaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagagaggacaacctggagaacatcgatggctgaacaaatgaataagatagtagcaggaa 170
Query: 241 atgatgcagagaagctaaccaagaacaagctggatcgagctctgtaaagaattgcaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atgatgcagagaagctaaccaagaacaagctggatcgagctctgtaaagaattgcaaaga 110
Query: 301 caattagctgtcagtcaatgaactagcaagtcactggaaactctaccacaggaagtgaaa 360
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 109 caattagctgtcagtcaatgaactagcaagtcactggaaactctatcagaggaagtgaaa 50
Query: 361 taattgggcatccatttaataaaggctagctttgctagattcactgagg 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 taattgggcatccatttaataaaggctagctttgctagattcactgagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
