BAC Information

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BAC

Clone NameMSMg01-180D13
Chromosome5 (Build37)
Map Location 111,961,248 - 112,115,869
singlet/doubletdoublet
Overlap genenone
Upstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D13.T7 (MSMg01no180_d13.b1)MSMg01-180D13.TJ (MSMg01no180_d13.g1)
ACCAG373764AG373765
length758726
length of high quality
(start - end)		235 (115 - 349)287 (66 - 352)
definitionCHROMAT_FILE: MSMg01no180_d13.b1 PHD_FILE: MSMg01no180_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:24 2005CHROMAT_FILE: MSMg01no180_d13.g1 PHD_FILE: MSMg01no180_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,115,636 - 112,115,869)(111,961,248 - 111,961,531)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCT
ACACATTGGGTCAGAAGGACCAGAACTTCCCAGCCTTATGTAATGGACTA
TTCCATGTACTGCCTCAGAAGGAGCTTCCTTCTTTCCCCGTGTTGCTTAG
GCCAGGGCTTTTGTATCCGTGATCAGGGGACTTACTTGGCAGGCCTGCCC
AGGCTGGAACTCTAAGCATTGAAGTCTCCTCTGAGCACAGTGGAGATCAC
AGTGCCAATAGCCGTCTGTCATGAGCTCCCATTACAAGTCTTTCCAACTC
AGGGTACAGTGACATCAAATGAGGGTAAGCAGCAGGGTAAAGTAGGTATA
TTTTATGGATCGCCCCGCCACACGATGGAAGGATGGAAGGATGGAAGGTT
TGTNTGGTCCCCCCCATAAAAAAAAAAAATTCGGTGGGGGGGTGGGCTCC
CTCCCCCCCCCATTTTCTTTCTTTTTCCTTCTCCATCCCCCCCCCCCCTT
TCTTTTTTTTCTATTCCCACCAACTTTATTTATTTTACCCATTTACTTTT
TTTCCTATTTTTTTTTTTTCACCCCCCACCCCCATTAATTTTTTCTTTTT
TCTCCGCTCTTATCTCCTTTTCTCCCCTTTTTTTATATCCGCCCCTCCCC
ATCCTCTTTTTTCCATTTTTTTCTTAGCCCCTTTTTATCCTTTTTTCCCC
CCCCCCACCCCCTCCCTTTATTTTCCCTCCCCCCCCCCTTTTTCCCCCCC
CCTCCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAATTCCAGGCTTTATTTATGGCCCCATTTCATAGT
TCATTGTGTTTCTTTCTATCTCAGTGTGAAGCTGCCCAAGGATGTCTCAG
ATCTTGTCATCCTCAGATCACAGCCACGGGGTACAGTGTTAGGGTAGGTG
GGGCTTGCACAGGCAGGGGGATTGCCGACCTTCAAGTCTTCTGTCTGTCT
CCCAGGAGCGTGATGACCAAATCTCTTCTGTTCAATGGGCACAGCCCTGT
TCTCCGTGTGTTCTGGAGGGCGAAAACAGGTTGATGGTGAAATCTGTGTT
GTGCTTGCACTGCAGCCTGGCACACATAGGCGCCTACCACCATCCTGCCT
GTTGGCAGCATGATGTATCGCCATTTCTGATTAATGGTGGCTTGGCGTGG
CACCGGCCAGGCCTGGGACAGCCTTTGGAACAGAAATAGCTTATTGTCCT
GGGACCTGGGGAAGAGCAGGGCTATGGTGCCAGCCTCTCCAAGCCTCGAT
GTCCCTGTCTGTGGGATGGGTCAGGCCCTGTCCTCATCAGTTGGAGCTCT
GCCTGCAAACTGTTCAGGAGCAGATGCCAGCTCGGCTCTGCTCCTGGGTG
GGTGGTGGCCAAGATTAGGTTTCTGAGCCTCTATGCCTGCTGTACTGTAG
AGGGCCTCACTGTTCCTCCCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d13.b1 MSMg01no180_d13.b1 CHROMAT_FILE:
MSMg01no180_d13.b1 PHD_FILE: MSMg01no180_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:24 2005
         (235 letters)



>mm_chr5_112115436_112116070
          Length = 635

 Score =  406 bits (210), Expect = e-118
 Identities = 228/234 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaggagcttccttctttccccgtgttgcttaggccagggcttttgtatccgtgatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 434 tcagaaggagcttccttctttccccgtgttgcttaggccagggcttttgtatccatgacc 375

                                                                       
Query: 61  aggggacttacttggcaggcctgcccaggctggaactctaagcattgaagtctcctctga 120
           |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||
Sbjct: 374 aggggacttacttggcaggcttgcccaggctggaactctgggcattgaagtctcctctga 315

                                                                       
Query: 121 gcacagtggagatcacagtgccaatagccgtctgtcatgagctcccattacaagtctttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 314 gcacagtggagatcacagtgccaatagccgtctgtcatgagctcccattacaagtccttc 255

                                                                 
Query: 181 caactcagggtacagtgacatcaaatgagggtaagcagcagggtaaagtaggta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caactcagggtacagtgacatcaaatgagggtaagcagcagggtaaagtaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no180_d13.g1 MSMg01no180_d13.g1 CHROMAT_FILE:
MSMg01no180_d13.g1 PHD_FILE: MSMg01no180_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:25 2005
         (287 letters)



>mm_chr5_111961048_111961735
          Length = 688

 Score =  451 bits (233), Expect = e-131
 Identities = 272/285 (95%), Gaps = 3/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattccaggctttatttatggccccatttcatagttca-ttgtgtttctttctatctcag 59
           |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 201 aattccaggctttatttatggccccatttcatagttcatttgggtttatttctatctcag 260

                                                                       
Query: 60  tgtgaagctgcccaaggatgtctcagatcttgtcatcctcagatcacagccacggggtac 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaagctgcccaaggatgtctcggatcttgtcatcctcagatcacagccacggggtac 320

                                                                       
Query: 120 agtgttagggtaggtggggcttgcacaggcagggggattgccgaccttcaagtcttctgt 179
           ||||||||| ||| ||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 321 agtgttaggatagatggggcttgcagaggcagggggattgctgaacttcaagtcttctgt 380

                                                                       
Query: 180 ctgtctcccaggagcgtgatgaccaaatctcttctgttc-aatgggcacagccctgttct 238
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 381 ctgtctcccaggagcgtgatgaccaaatctcttctgt-ctaatgggcacagccctgttct 439

                                                        
Query: 239 ccgtgtgttctggagggcgaaaacaggttgatggtgaaatctgtg 283
           | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 ctgtgtgttctggagggcaaaaacaggttgatggtgaaatctgtg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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