Query= MSMg01no180_i18.b1 MSMg01no180_i18.b1 CHROMAT_FILE:
MSMg01no180_i18.b1 PHD_FILE: MSMg01no180_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:49 2005
(648 letters)
>mm_chr5_133111619_133112666
Length = 1048
Score = 1199 bits (620), Expect = 0.0
Identities = 638/644 (99%), Gaps = 3/644 (0%)
Strand = Plus / Plus
Query: 5 gaattctccaagctttttcaacttgacacacaaacacaccagggataaactatatataac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctccaagctttttcaacttgacacacaaacacaccagggataaactatatataac 266
Query: 65 ctttgtctttgttgccaccaagatctcaatatcataacataaaacaccatccaaatttaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 ctttgtctttgttgccaccaagatctcaatatcataacataaaacaccat-caaatttaa 325
Query: 125 aagtcccacgatctttaaaatttctcaacagtttaaaagtccagcgtcttttttaaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagtcccacgatctttaaaatttctcaacagtttaaaagtccagcgtcttttttaaaaaa 385
Query: 185 aatctaaaatatttcatctgtcagttcttgtaaaatcaaaaccacgttatacgatttctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatctaaaatatttcatctgtcagttcttgtaaaatcaaaaccacgttatacgatttctt 445
Query: 245 atttgaaaagaaaagaaccagggtgtagtacaatcagcctaaagtgaaaccaaaataaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttgaaaagaaaagaaccagggtgtagtacaatcagcctaaagtgaaaccaaaataaag 505
Query: 305 aaatgaaagtaattatatcctatagctcaatgtccagcatttgagactcatgatcttctg 364
|||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 506 aaatgaaagtaa-aagatcctatagttcaatgtccagcatttgagactcatgatcttctg 564
Query: 365 ggtgccaaaaaatttgagtagttctactcatcgcacaaagaaaagggggcagaattgctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtgccaaaaaatttgagtagttctactcatcgcacaaagaaaagggggcagaattgctc 624
Query: 425 ccaaacaaaagtactgtgctcagctatgcttgggaaacaaaatctacatttttgaaaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaaacaaaagtactgtgctcagctatgcttgggaaacaaaatctacatttttgaaaaag 684
Query: 485 aaagtaatctgatctaggaaatagaagggggtcccagattagttttttttttataataaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 aaagtaatctgatctaggaaatagaagggggtcccagattagttttttttt-ataataaa 743
Query: 545 atagaaaaagctgaggtgcactaactttatgaagaaaagaggtttatttagctcacagtt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atagaaaaagctgaggtgcactaactttatgaagaaaagaggtttatttagctcacagtt 803
Query: 605 tcagagatttgagggcacgatgctggcatcagctcagctctgaa 648
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcagagatttgagggcacgatgctggcatcagctcagctctgaa 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_i18.g1 MSMg01no180_i18.g1 CHROMAT_FILE:
MSMg01no180_i18.g1 PHD_FILE: MSMg01no180_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:49 2005
(491 letters)
>mm_chr5_133282482_133283374
Length = 893
Score = 617 bits (319), Expect = 0.0
Identities = 346/355 (97%), Gaps = 2/355 (0%)
Strand = Plus / Minus
Query: 139 gtgggctggtgtacagttcagcagttggacacttacctagaattctcttggatagggtca 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gtgggctggtgtacagttcagcagttggacacttacctagaattctcttggatagggtca 834
Query: 199 tgacccagcagtaaagtacctgcctagaaccccgcagcagtggaattggagtgtgataga 258
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 833 tgacccagcagtaaagtacctgcctagaaccccacagcagtggaattggagtgtgataga 774
Query: 259 gcacctgcctgaaatcccccagacaggatctgaagaaactagagtgcttgcttagaatct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gcacctgcctgaaatcccccagacaggatctgaagaaactagagtgcttgcttagaatct 714
Query: 319 ctgagtgaggggttcggctcagtggaacaccatttgcctggcatgcaaaagaatgcttag 378
||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct: 713 ctgagtgaggggttcggctcagtggaatagcattagcctggcatgcaaaagaatgcttag 654
Query: 379 ttccatcccaacagcacaaaaa-ctgaaaa-gcaaaatgggttgtaattcctatattgta 436
||| |||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 653 ttctatcccaacagcacaaaaaactgaaaaagcaaaataggttgtaattcctgtattgta 594
Query: 437 tcactgttatggtaaagaataagaaaggcactgtgtgtgtgtgtgtgtgtgtgtg 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcactgttatggtaaagaataagaaaggcactgtgtgtgtgtgtgtgtgtgtgtg 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 893
Length adjustment: 10
Effective length of query: 481
Effective length of database: 883
Effective search space: 424723
Effective search space used: 424723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
