BAC Information

Click to search

BAC

Clone NameMSMg01-181B22
Chromosome5 (Build37)
Map Location 60,878,325 - 60,878,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181B22.T7 (MSMg01no181_b22.b1)MSMg01-181B22.TJ (MSMg01no181_b22.g1)
ACCAG374394AG374395
length932748
length of high quality
(start - end)
---317 (46 - 362)
definitionCHROMAT_FILE: MSMg01no181_b22.b1 PHD_FILE: MSMg01no181_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:31 2005CHROMAT_FILE: MSMg01no181_b22.g1 PHD_FILE: MSMg01no181_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATACGATTGCAGTGGGAGGCCAGGNGGAGGTCTGTATCCCGAAAAGGGGG
NNGAANAGCAGAAGGATTCCAAAAAGGGGGGGAAGANAAGGAAAAGGAAA
AAGAAAGGGAAGAGGGGNGGGGAAGTTTAAACCCCAAACAACGGAGATAA
TAAAATAATGTGTGNCGGNGTTTGATTGTGTATTATATATGCGAAGCACC
GTTTGGTCGCNCTCGCCGCCCCTCGATAGCGACCTATGATAGCGCGGGGT
GTGCGGGTCGCTTGTAACTTATGTGTACAGTCACCACCGAATAGTGTATT
TTCGCTCCCTAGTAGCGCACCACACTCTGCGTAGCAAACACTATATCGAA
TTAGAAGAGCCGGGGCGGGTAAGGTAATGCAAAATATTGTTTTTTTTTCG
GCGCCGCGCCCCCGGGATGGCGAAGAAGACCCGGCCGTTGTTTTATATTT
CCCCCCCCCCCCCCCCGCCCATGAGGGCGATATAATAGGGAAAGGATGGT
ATGGTATGCAGGTTGCGCCCCCCCACAAAAAAAAAAAAAAAATTATTAGT
GGTGGGGCGCGGCGCGTGTTTTTATTCATAACAGATGGATAAATGAGAGC
ATGAGGCAGGGTGTCGCGTTCCACATGAATAAAAGGGGCACGCACGTATT
GCTCACCGTTCACACCCCCCATTCTTTTATTCAGCCTCCCACCCCCGTTT
TGTTTTTTTCTCTCCCGATTTTTGTTCTCCCCGCCCCCTCTCCCCGCCCG
CCGTCGCCCTTGTTTTTTTTACACCCCGCACCCCCGCCCCGCCCTTTATT
ATTTTTTGTTAAGAGTGAGTGGCGCGCCAAACGACCCGCTCTTTGTCCAT
TGTTTTATGCACCACCCCACCACACCCGCCGCCCAGATGGAGGAGGGATA
AAAATGTTTGACGGTGTGCCGTATTAACAGTN
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTGTTCTCACATACTGGAGCCAAATTCATAACCCAGTTAATCT
TTTGTCTCTCATATTTAAAAAATAAAACAATAGTGCAATTTTCTCTTATC
AAGTAGAGTCAATATGGTCCTATTGAATGTTCCAACTTCTCCATGTTAAT
CCCACAGACAAAACTATGTAGGTAGGTTCTTTGAAATAAAACAGGAATTT
CACTGTTTAGAGTTTTTACTTTCTTCATTTTTAATGAACTTGAATTGGCA
ACCCTGAGGGTCTATAACACCATGATAATATGACACCTTCATGATATGAG
TACACCTTCAACAGGTTTCTTTTTGTACTAAAANNNNNNNNNNNNNTCAA
TCAATAGAGTTATATTTCAAAGNNNNNNTTANTTATAANNNNNNNNNNCC
TTTNNNNNNNNNNNNNNNNANAAGGTTTAAATTTTTTTTTNTTTCNNNGN
GGGTTCTTTNNTAAAATAAAAAAAAAGAANNAAANCNNAAATATAAAAAA
TTATATTCTTGTTATAGATTCCCNNNNNNNNNANNNNNNNNAATTTTTAA
AAATAAACCTTATAATAACTAGAAAAAAAANANAAAAAAAAAAGTTTTCC
CCCGAGGGGGCTTTTNNTTTATTGAAAATTTTTTAAAATATNTAAAAAAA
ATACCCCCCCCCCCCCCCCAAAATTTAATTCAAAAATCTTTATAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_b22.g1 MSMg01no181_b22.g1 CHROMAT_FILE:
MSMg01no181_b22.g1 PHD_FILE: MSMg01no181_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:31 2005
         (317 letters)



>mm_chr5_60878122_60878838
          Length = 717

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttgttctcacatactggagccaaattcataacccagttaatcttttgtctc 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttgttctcagatactggagccaaattcataacccagttaatcttttgtctc 263

                                                                       
Query: 64  tcatatttaaaaaataaaacaatagtgcaattttctcttatcaagtagagtcaatatggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcatatttaaaaaataaaacaatagtgcaattttctcttatcaagtagagtcaatatggt 323

                                                                       
Query: 124 cctattgaatgttccaacttctccatgttaatcccacagacaaaactatgtaggtaggtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctattgaatgttccaacttctccatgttaatcccacagacaaaactatgtaggtaggtt 383

                                                                       
Query: 184 ctttgaaataaaacaggaatttcactgtttagagtttttactttcttcatttttaatgaa 243
           ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 384 ctttgaaataaaacagggatttcacagtttagagtttttaatttcttcatttttaatgaa 443

                                                                       
Query: 244 cttgaattggcaaccctgagggtctataacaccatgataatatgacaccttcatgatatg 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 cttgaattggcaaccctgagggtctataacaccatgattatatgacaccttcatgatatg 503

                         
Query: 304 agtacaccttcaac 317
           ||||||||||||||
Sbjct: 504 agtacaccttcaac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)