Query= MSMg01no181_c15.b1 MSMg01no181_c15.b1 CHROMAT_FILE:
MSMg01no181_c15.b1 PHD_FILE: MSMg01no181_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:34 2005
(488 letters)
>mm_chr5_37421035_37421918
Length = 884
Score = 845 bits (437), Expect = 0.0
Identities = 470/487 (96%), Gaps = 12/487 (2%)
Strand = Plus / Minus
Query: 6 gaattccaag----aggttgccaggttttgagacatctcagttcccagaatccctagtgg 61
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattccaagaggcaggt----aggttttgagacatctcagttcccagaatccctagtgg 629
Query: 62 gctagatctgcctgaggggagacccacataaatcttgctgttgcacacaagtgtgatgga 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 628 gctagatctgcctgaggggagacccacataaatcttgctgttgcacacaagtgt----ga 573
Query: 122 tgctctgggaggtacacatagggagtcacagtttggcaaatcaagagaaagccacaagaa 181
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgctctggggggtacacatagggagtcacagtttggcaaatcaagagaaagccacaagaa 513
Query: 182 tgtaactccggtgcagggttacattattacatgaacaggaatttctcagacagacaagaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgtaactccggtgcagggttacattattacatgaacaggaatttctcagacagacaagaa 453
Query: 242 ggaaacagtattttaaaggaacggcaggggaaaccctatttgtgtgcagacaagaccatg 301
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 452 ggaaacagtattttaaaggaacggcagggaaaacccaatttgtgtgcagacaagaccatg 393
Query: 302 aagcacaaaagttgccgagacaggacagcaggaaaagggatcaggtgggccagggacacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagcacaaaagttgccgagacaggacagcaggaaaagggatcaggtgggccagggacacc 333
Query: 362 aacagtgaggaacttgctgcacaacggagacagtaggactctgaagatggcttataaaac 421
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 aacagtgaggaacttgctgcacaacggagacagtgggactctgaagatggcttataaaac 273
Query: 422 agggaatgacagtcttgacatctacaagaccacaaaccttttgagaatttcatgttgcga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 272 agggaatgacagtcttgacatctacaagaccacaaaccttttgagaatttcatgttgtga 213
Query: 482 aacggcc 488
|||||||
Sbjct: 212 aacggcc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 884
Length adjustment: 10
Effective length of query: 478
Effective length of database: 874
Effective search space: 417772
Effective search space used: 417772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_c15.g1 MSMg01no181_c15.g1 CHROMAT_FILE:
MSMg01no181_c15.g1 PHD_FILE: MSMg01no181_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:35 2005
(461 letters)
>mm_chr5_37271317_37272177
Length = 861
Score = 868 bits (449), Expect = 0.0
Identities = 458/461 (99%)
Strand = Plus / Plus
Query: 1 caagggcactgttgccactggtcatatctgtcaagaactcttcctaggacttttaataag 60
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caagggcaccgttgccactggtcatatctgtcaagaactcttcctaggaattttaataag 260
Query: 61 ttgcgtgctggtgggtattgtggaggcaccatctgccaggggtcatgcaggcccctgcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcgtgctggtgggtattgtggaggcaccatctgccaggggtcatgcaggcccctgcga 320
Query: 121 agggctcctctctggacacttttgtgcatctttgcttttctctccgggaggcaggtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggctcctctctggacacttttgtgcatctttgcttttctctccgggaggcaggtgggg 380
Query: 181 cttcttctggaatgtcttcccggactcccaggtctccccaaggacctcactcagcagtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcttctggaatgtcttcccggactcccaggtctccccaaggacctcactcagcagtgc 440
Query: 241 cccagagcccactaaggtcaacccttccacacttgccaacttcactgtaaagacgtggtg 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 cccagagcccactaaggtcaacccttccacacttgccaacttgactgtaaagacgtggtg 500
Query: 301 atctgaggcccccttacaggtccttcctggctgtggcgtcacggctgagggatgtttata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctgaggcccccttacaggtccttcctggctgtggcgtcacggctgagggatgtttata 560
Query: 361 ccctccttgtctgtctttctgatcacctgtcacctctgcagcaaacacaactccttgctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctccttgtctgtctttctgatcacctgtcacctctgcagcaaacacaactccttgctc 620
Query: 421 tttcatatgctccttgtagtgtttaattttgtgtggttggc 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcatatgctccttgtagtgtttaattttgtgtggttggc 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
