BAC Information

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BAC

Clone NameMSMg01-181E06
Chromosome5 (Build37)
Map Location 67,454,260 - 67,583,803
singlet/doubletdoublet
Overlap genePhox2b
Upstream geneBC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
Downstream geneTmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181E06.T7 (MSMg01no181_e06.b1)MSMg01-181E06.TJ (MSMg01no181_e06.g1)
ACCAG374495AG374496
length714713
length of high quality
(start - end)		587 (43 - 629)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no181_e06.b1 PHD_FILE: MSMg01no181_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:42 2005CHROMAT_FILE: MSMg01no181_e06.g1 PHD_FILE: MSMg01no181_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,454,260 - 67,454,840)(67,583,520 - 67,583,803)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCAGGAGTTTACAGGAGGTATGGCCTAAAGTGTGAACTGCTCCCTGC
CTCCAGAATGGTATATAGACCAAGAACACATTCTTAGTAAGAAATCGCTA
TCTGGTTCCCTGCTGACTACAATACAATTTTCTCTAGTCCTTAGTCGTTG
TCCTCCCACCCCCACCCCCAGTCTCTTTATTGGACATAAAGTAACTGGTG
TTTGTGCAGAAACATTGTGCGTGCTTTTTCTTTCTTTCTTTCCTTTAAAT
AAATGGCTGGTGTTTGGTTTTTATTAGCATCAAATGAAGATGGTGCACAG
AAAGCACGGATTCTGAAAAATGTCTCCTCTCTGCACTGACGGCATGTTCA
CTCAGACCTTATCTTTACATTCCAGGAAGTTATTTTGTTTTTAACAGCAA
CAACAGCGAAACCGTCCAACAACATAAAATTCCTTGTACATCTTGTTCAG
TTGGAGAATTTTAATGTTTTTAATTTGTCACTGTAAAACCAAAGACAGAC
GATTTTATATAACTTTATATACATAGCGTTTACACACAAGGCAATCTGTC
TTTAAGTAGAGGTTAAAGCCCCCGGAGCGGCGGGAAGCCGTGAATCCTAT
ATAGCTCCCCCTTCAAGTCAACTGTCTGTTGCTTAAATAAACCTCTGCTT
TAAGATTTTAAAAT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGACTACACAGAGAAA
CCCTGTCTTGAAAAACAAACAAGAAAACAATGTCTTGTTCACTTGGTAAA
TCTCCATCTTTAAGTCCCTATATCCAAAAACAGGTCCTTTGTTATCTTTC
CAGGAAGGAAATAAAAAATACTTGGTCAGTAGTATAATTAAGGGAACAGA
GAAATGACCACACCCTTACACTGTGGATAGGCACCTAAATTTATCCAGGC
TTTTAGGAATGGCAATCTGGTAATATGGCAATGCCATCTGATAGGTGAAT
TTTTAAAATAATTTATGCACCCTCCTACCCGGGGACACTCCTTGTGTACC
AGAAGGATGCTCCAGAAGGAAAATAAAGATAAATATGTTATTATATGAGA
AAAATATCTCAAATATGTGTATATGTGTTCGTGGGAAGAGAACACTAACA
CTGGTAACTTCAGAACCAGAATTGGAGGATGTTTTTCAGGATTAATATTT
CTGCAGGGATCTGCTATCTCCGCTATAAACCAGGAGGTAGTGGAGGAGGG
CTTGGAGAGTTTGCTTCTTTGTTTTGCTTTTGTTTGTACCTGTATGTTTA
CGCCCATGTCTCTGTGCATACGTGCTTGTTCATATGTATGGCTATACATA
TGTGCCCCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_e06.b1 MSMg01no181_e06.b1 CHROMAT_FILE:
MSMg01no181_e06.b1 PHD_FILE: MSMg01no181_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:42 2005
         (587 letters)



>mm_chr5_67454054_67455040
          Length = 987

 Score = 1031 bits (533), Expect = 0.0
 Identities = 569/581 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccaggagtttacaggaggtatggcctaaagtgtgaactgctccctgcctccagaa 66
           ||||||||||||   ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 207 gaattccaggagcagacaggtggtatggcctgaagtgtgaactgctccctgcctccagaa 266

                                                                       
Query: 67  tggtatatagaccaagaacacattcttagtaagaaatcgctatctggttccctgctgact 126
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 267 tggtatatagaccaagaacacattcttagtaagaaatcgccatctggttccctgctgact 326

                                                                       
Query: 127 acaatacaattttctctagtccttagtcgttgtcctcccacccccacccccagtctcttt 186
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 327 acaatacaattttctctagtccttcgtcgttgtcctcccacccccacccccagtctcttt 386

                                                                       
Query: 187 attggacataaagtaactggtgtttgtgcagaaacattgtgcgtgctttttctttctttc 246
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 387 attggacataaagtaactggtgtgcgtgcagaaacattgtgcgtgctttttctttctttc 446

                                                                       
Query: 247 tttcctttaaataaatggctggtgtttggtttttattagcatcaaatgaagatggtgcac 306
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttcctttaagtaaatggctggtgtttggtttttattagcatcaaatgaagatggtgcac 506

                                                                       
Query: 307 agaaagcacggattctgaaaaatgtctcctctctgcactgacggcatgttcactcagacc 366
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agaaagcacgggttctgaaaaatgtctcctctctgcactgacggcatgttcactcagacc 566

                                                                       
Query: 367 ttatctttacattccaggaagttattttgtttttaacagcaacaacagcgaaaccgtcca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttatctttacattccaggaagttattttgtttttaacagcaacaacagcgaaaccgtcca 626

                                                                       
Query: 427 acaacataaaattccttgtacatcttgttcagttggagaattttaatgtttttaatttgt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 627 acaacataaaattccttgtacatcttgttcagttggagaattttaatgtttttcatttgt 686

                                                                       
Query: 487 cactgtaaaaccaaagacagacgattttatataactttatatacatagcgtttacacaca 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cactgtaaaaccaaagacagacgattttatataactttatatacatagcgtttacacaca 746

                                                    
Query: 547 aggcaatctgtctttaagtagaggttaaagcccccggagcg 587
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aggcaatctgtctttaagtagaggttaaagcccccggagcg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_e06.g1 MSMg01no181_e06.g1 CHROMAT_FILE:
MSMg01no181_e06.g1 PHD_FILE: MSMg01no181_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:42 2005
         (284 letters)



>mm_chr5_67583274_67583957
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccaggactacacagagaaaccctgtcttgaaaaacaaacaagaaaacaatgt 60
           |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 530 caggacagtcaggactacacagagaaaccctgtcttttaaaacaaacaagaaaacaatgt 471

                                                                       
Query: 61  cttgttcacttggtaaatctccatctttaagtccctatatccaaaaacaggtcctttgtt 120
           |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||
Sbjct: 470 cttgttcacttggtaaatctctgtctttaagtccctatatccaaaaacgggtcctttgtt 411

                                                                       
Query: 121 atctttccaggaaggaaataaaaaatacttggtcagtagtataattaagggaacagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atctttccaggaaggaaataaaaaatacttggtcagtagtataattaagggaacagagaa 351

                                                                       
Query: 181 atgaccacacccttacactgtggataggcacctaaatttatccaggcttttaggaatggc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atggccacacccttacactgtggataggcacctaaatttatccaggcttttaggaatggc 291

                                                       
Query: 241 aatctggtaatatggcaatgccatctgataggtgaatttttaaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aatctggtaatatggcaatgccatctgataggtgaatttttaaa 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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