BAC Information

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BAC

Clone NameMSMg01-181F07
Chromosome5 (Build37)
Map Location 31,749,446 - 31,750,061
singlet/doubletsinglet
Overlap genenone
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181F07.T7 (MSMg01no181_f07.b1)MSMg01-181F07.TJ (MSMg01no181_f07.g1)
ACCAG374538AG374539
length739737
length of high quality
(start - end)
645 (40 - 684)374 (77 - 450)
definitionCHROMAT_FILE: MSMg01no181_f07.b1 PHD_FILE: MSMg01no181_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:46 2005CHROMAT_FILE: MSMg01no181_f07.g1 PHD_FILE: MSMg01no181_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACTCAGTATCCCAGTTGCCAGATGTGAAGTCCTCTGAGTTGGGCTGGAAA
CAGGTACACTGTCTTTAGGGTTCAACTCTGGGCCACAGTTGCAGGAGATA
AAACCTTCTGTGGTGAGCACAGAGGTTAAGCTGCTAGAAGAGTCACCTCA
GGAATTGAAGCATAAACCTAGATTGCAATTTAGGAAATCTTGTGACTGGA
GTCACAGTAAAAATGTTATGGCACCCAACACCGAGATACAAGATGTAGAA
TTATCTGACTTGCACCCTAGTCCAGAACTTCAGGGTATAAAATCTAAGGT
GTTCTGTCCTAGGTTACACTTGGAAGATGTGATGCCTGCATGTACTCCCA
ATTTAAATTCTCAATAGGTAAATTCCAGTGAGTATATATCTGGGCCATAT
TTTCAAGATACAAATTCCTCTACATGTATTCCAGAGACAAATGTTCATTG
TATAAGTTTTGAGTGCAATCCAGGAATACATTTGCATGGAACGAATACTT
CCTCATGCTTTTCAGGATCAAAATAGCAAGTTTAGATTCAATTGGGAGCA
ACACTGAATCATATTTGCAAGATGACAATTCTACTGAATGCACTCCAGGG
TCAAGTCCTTAGTGTGTAAAGTCTTCTGCATGCGCACCAGAACCAAAACC
TCCATTTGTAAATTCCCCTGAGTGCAATCCTGAATCATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAACACCTGAAAAAATGTTCAACATCCCTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAACAGATGCTGGCAGGGATGTGGAGAAAGGGAA
ACACTCCTCCATTGTTGGTGGGATTGCAAACTTGTACAACCACTCTAGAA
ATCAGTCTGGCTGTTCCTCATAAAACTGGACATAGTACTACCGGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCTGTAAG
AAGGACACATGCTCCAGTATGCTCATAGCTGCCTTGTTTATAATAGCCAG
AAGCTGGAAATAACCCAGATGCCCCTCAACAGAGGAATGGTTACAGAAAA
TGTGGTACATTTACACAATGGAATACTACTCAGCTATTACCAAATGAATT
CATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTACCATCCTGAGTG
ACGTAACCCAATCTCAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATAATATACCAGAAACTTACGATACCCAAGATATAAGATACAATTCGC
CAAACGCTTGATATTCTTGAAGAACGAATACCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_f07.b1 MSMg01no181_f07.b1 CHROMAT_FILE:
MSMg01no181_f07.b1 PHD_FILE: MSMg01no181_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:46 2005
         (645 letters)



>mm_chr5_31749225_31750270
          Length = 1046

 Score =  571 bits (295), Expect = e-167
 Identities = 541/629 (86%), Gaps = 28/629 (4%)
 Strand = Plus / Plus

                                                                       
Query: 23  cagttgccagatgtgaagtcctctgagttggg-ctggaaacaggtacactgtctttaggg 81
           |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| | 
Sbjct: 222 cagttgccagatgtgaagccctctgagttgggcctgggaacaggtacactgtctttaagt 281

                                                                       
Query: 82  ttcaactctgggccacagttgcaggagataaaaccttctgtggtgagcacagaggttaag 141
           |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 282 ttcaaccctgggccatagttgcaggagataaaaccttctgtggtgagcacagaggtcaaa 341

                                                                       
Query: 142 ctgctagaagagtcacctcaggaattgaagcataaacctagattgcaatttaggaaatct 201
            |||| || |||||||||  |||||| |||||| |||||| |||||||| ||||||||| 
Sbjct: 342 atgctggaggagtcacctttggaattcaagcatgaacctatattgcaatgtaggaaatcc 401

                                                                       
Query: 202 tgtgactggagtcacagtaaaaatgttatggcacccaaca-ccgagatacaagatgtaga 260
           ||||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||||
Sbjct: 402 tgtgactggagtcacagtaaaaacgttatgatacccaa-atccgagatacaagatgtaga 460

                                                                       
Query: 261 attatctgacttgcaccctagtccagaacttcagggtataaaatctaaggtgttctgtcc 320
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 461 attatctgagttacaccctagtccagaacttcagggtataaaatctaaggtgttctgccc 520

                                                                       
Query: 321 taggttacacttggaagatgtg-atgcctgcatgtac-tcccaatttaaattctcaatag 378
           | ||| ||||||||||||| || || | ||||| ||| ||| ||| ||||||||||||| 
Sbjct: 521 tgggtcacacttggaagatatgtattc-tgcatctacctcc-aatataaattctcaatat 578

                                                                       
Query: 379 gtaaattccagtgagt-atatatctgggccatattttcaagatacaaattcctctacatg 437
           |||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| ||||
Sbjct: 579 gtaaattccagtgagtca-atatctgtgccatatttgcaagatacaaattcctctgcatg 637

                                                                       
Query: 438 tattccagagacaaatgttcatt----gtataagttttgagtgcaatccaggaatacatt 493
            ||||||||  ||||    || |    ||||||| | ||||| |||||| |||||| |||
Sbjct: 638 cattccagatccaaa----cactcagcgtataaggtgtgagttcaatcctggaatatatt 693

                                                                       
Query: 494 tgcatggaacgaa--tacttcctcatgcttttcaggatcaaaatagcaa-gtttagattc 550
           ||||||||||  |  | ||||||  || || ||||||||||||| |||| || |||||||
Sbjct: 694 tgcatggaac--agtttcttccttgtggttctcaggatcaaaattgcaatgtgtagattc 751

                                                                       
Query: 551 aattgggagcaa-cactgaatcatatttgcaaga--tgacaattctactgaatgcactcc 607
            ||||| ||||| | |||| ||| ||||||||||  | | ||||||||||||||||| ||
Sbjct: 752 tattggcagcaatc-ctgagtcacatttgcaagacat-a-aattctactgaatgcacccc 808

                                        
Query: 608 agggtcaagtccttagtgtgtaaagtctt 636
           || | |||||||| |||||| ||| ||||
Sbjct: 809 agagacaagtcctcagtgtgcaaattctt 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space:   657860
Effective search space used:   657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)