BAC Information

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BAC

Clone NameMSMg01-181G07
Chromosome5 (Build37)
Map Location 31,749,446 - 31,750,061
singlet/doubletsinglet
Overlap genenone
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181G07.T7 (MSMg01no181_g07.b1)MSMg01-181G07.TJ (MSMg01no181_g07.g1)
ACCAG374583AG374584
length729726
length of high quality
(start - end)		635 (45 - 679)641 (73 - 713)
definitionCHROMAT_FILE: MSMg01no181_g07.b1 PHD_FILE: MSMg01no181_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:51 2005CHROMAT_FILE: MSMg01no181_g07.g1 PHD_FILE: MSMg01no181_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTCAGATCCCAGTTGCCAGATGTGAAGTCCTCTGAGTTGGGCTG
GAAACAGGTACACTGTCTTTAGGGTTCAACTCTGGGCCACAGTTGCAGGA
GATAAAACCTTCTGTGGTGAGCACAGAGGTTAAGCTGCTAGAAGAGTCAC
CTCAGGAATTGAAGCATAAACCTAGATTGCAATTTAGGAAATCTTGTGAC
TGGAGTCACAGTAAAAATGTTATGGCACCCAACACCGAGATACAAGATGT
AGAATTATCTGACTTGCACCCTAGTCCAGAACTTCAGGGTATAAAATCTA
AGGTGTTCTGTCCTAGGTTACACTTGGAAGATGTGATGCCTGCATGTACT
CCCAATTTAAATTCTCAATAGGTAAATTCCAGTGAGTATATATCTGGGCC
ATATTTTCAAGATACAAATTCCTCTACATGTATTCCAGAGACAAATGTTC
ATTGTATAAGTTTTGAGTGCAATCCAGGAATACATTTGCATGGAACGAAT
ACTTCCTCATGCTTTTCAGGATCAAAATAGCAAGTTTAGATTCAATTGGG
AGCAACACTGAATCATATTTGCAAGATGAAAATTCTACTGAATGCACTCC
AGGGTCAAGTCCTTAGTGTGAAAAGTCTTCTGCATGCACACCAGAACCAA
AACCTCCATTTGCAAATTCTCCCGAGTGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AACACCTGAAAAAATGTTCAACATCCCTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAA
AAACTCAGGTGACAACAGATGCTGGCAGGGATGTGGAGAAAGGGAAACAC
TCCTCCATTGTTGGTGGGATTGCAAACTTGTACAACCACTCTAGAAATCA
GTCTGGCTGTTCCTCATAAAACTGGACATAGTACTACCGGAGGATCCTGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCTGTAAGAAGG
ACACATGCTCCAGTATGTTCATAGCTGCCTTGTTTATAATAGCCAGAAGC
TGGAAATAACCCAGATGCCCCTCAACAGAGGAATGGTTACAGAAAATGTG
GTACATTTACACAATGGAATACTACTCAGCTATTAAAAAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGT
AACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGACCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAA
CGCATGAAATTTCAGAAGAACGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_g07.b1 MSMg01no181_g07.b1 CHROMAT_FILE:
MSMg01no181_g07.b1 PHD_FILE: MSMg01no181_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:51 2005
         (635 letters)



>mm_chr5_31749226_31750261
          Length = 1036

 Score =  574 bits (297), Expect = e-168
 Identities = 541/629 (86%), Gaps = 28/629 (4%)
 Strand = Plus / Plus

                                                                       
Query: 22  cagttgccagatgtgaagtcctctgagttggg-ctggaaacaggtacactgtctttaggg 80
           |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| | 
Sbjct: 221 cagttgccagatgtgaagccctctgagttgggcctgggaacaggtacactgtctttaagt 280

                                                                       
Query: 81  ttcaactctgggccacagttgcaggagataaaaccttctgtggtgagcacagaggttaag 140
           |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 281 ttcaaccctgggccatagttgcaggagataaaaccttctgtggtgagcacagaggtcaaa 340

                                                                       
Query: 141 ctgctagaagagtcacctcaggaattgaagcataaacctagattgcaatttaggaaatct 200
            |||| || |||||||||  |||||| |||||| |||||| |||||||| ||||||||| 
Sbjct: 341 atgctggaggagtcacctttggaattcaagcatgaacctatattgcaatgtaggaaatcc 400

                                                                       
Query: 201 tgtgactggagtcacagtaaaaatgttatggcacccaaca-ccgagatacaagatgtaga 259
           ||||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||||
Sbjct: 401 tgtgactggagtcacagtaaaaacgttatgatacccaa-atccgagatacaagatgtaga 459

                                                                       
Query: 260 attatctgacttgcaccctagtccagaacttcagggtataaaatctaaggtgttctgtcc 319
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 460 attatctgagttacaccctagtccagaacttcagggtataaaatctaaggtgttctgccc 519

                                                                       
Query: 320 taggttacacttggaagatgtg-atgcctgcatgtac-tcccaatttaaattctcaatag 377
           | ||| ||||||||||||| || || | ||||| ||| ||| ||| ||||||||||||| 
Sbjct: 520 tgggtcacacttggaagatatgtattc-tgcatctacctcc-aatataaattctcaatat 577

                                                                       
Query: 378 gtaaattccagtgagt-atatatctgggccatattttcaagatacaaattcctctacatg 436
           |||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| ||||
Sbjct: 578 gtaaattccagtgagtca-atatctgtgccatatttgcaagatacaaattcctctgcatg 636

                                                                       
Query: 437 tattccagagacaaatgttcatt----gtataagttttgagtgcaatccaggaatacatt 492
            ||||||||  ||||    || |    ||||||| | ||||| |||||| |||||| |||
Sbjct: 637 cattccagatccaaa----cactcagcgtataaggtgtgagttcaatcctggaatatatt 692

                                                                       
Query: 493 tgcatggaacgaa--tacttcctcatgcttttcaggatcaaaatagcaa-gtttagattc 549
           ||||||||||  |  | ||||||  || || ||||||||||||| |||| || |||||||
Sbjct: 693 tgcatggaac--agtttcttccttgtggttctcaggatcaaaattgcaatgtgtagattc 750

                                                                       
Query: 550 aattgggagcaa-cactgaatcatatttgcaaga--tgaaaattctactgaatgcactcc 606
            ||||| ||||| | |||| ||| ||||||||||  |  |||||||||||||||||| ||
Sbjct: 751 tattggcagcaatc-ctgagtcacatttgcaagacat--aaattctactgaatgcacccc 807

                                        
Query: 607 agggtcaagtccttagtgtgaaaagtctt 635
           || | |||||||| |||||| ||| ||||
Sbjct: 808 agagacaagtcctcagtgtgcaaattctt 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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