Query= MSMg01no181_g19.b1 MSMg01no181_g19.b1 CHROMAT_FILE:
MSMg01no181_g19.b1 PHD_FILE: MSMg01no181_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:53 2005
(533 letters)
>mm_chr5_19113144_19114077
Length = 934
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 7 gaattcacaaaatatacacaatttattgacccttgttcaaagacaaagtgtgctgcccag 66
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacaaaatatacataatttattgacccttgttcaaagacaaagtgtgctgcccag 266
Query: 67 aatacttgaactgtgtttcgttttattgctccctcgagaagcattttgtcattgattata 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatacttgaactgtgtttcgttttattgctccctcgagaagcattttgtcattgattata 326
Query: 127 cattttggactgtcaaaacctggatttcattaatgctgggtctattttatgataacactc 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 327 cattttggactgtcaaaacctggatttcattaatgctgggtctattttatgatagcactc 386
Query: 187 tgaatttggaatattaacaccagcatatgcatctaaacagatgtgtcatataaagcaatt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgaatttggaatattaacaccagcatatgcatctaaacagatgtgtcatataaagcaatt 446
Query: 247 gaacgttaaggaaggtcactgtgtggttttgggagtagtcaacaggttcagagcctgtga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaacgttaaggaaggtcactgtgtggttttgggagtagtcaacaggttcagagcctgtga 506
Query: 307 gagaaacacagtcatgcctgagtcacattccatagctaactctgaactgcagagaagtga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagaaacacagtcatgcctgagtcacattccatagctaactctgaactgcagagaagtga 566
Query: 367 gaaagatgacctacactccaattccctggcgc-gatactccctcttcctctcccagcatg 425
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 567 gaaagatgagctacactccaattccctggcgccgatactccctcttcctctcccagcatg 626
Query: 426 taattacaaaagttcctcaatattcatgagcaggaagcctcgggtaccaagaaaatatca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taattacaaaagttcctcaatattcatgagcaggaagcctcgggtaccaagaaaatatca 686
Query: 486 tgagatttgttttacctggagatttatacctttttaacctatctgcat 533
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgagatttgttttacctggagatttatacctttttaacctatctgcat 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space: 483252
Effective search space used: 483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_g19.g1 MSMg01no181_g19.g1 CHROMAT_FILE:
MSMg01no181_g19.g1 PHD_FILE: MSMg01no181_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:53 2005
(658 letters)
>mm_chr5_19284586_19285643
Length = 1058
Score = 1265 bits (654), Expect = 0.0
Identities = 657/658 (99%)
Strand = Plus / Minus
Query: 1 attgtggtaagaggattcacattcacaatacaggaaattaaacgatcatttcttgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attgtggtaagaggattcacattcacaatacaggaaattaaacgatcatttcttgtcaaa 799
Query: 61 caaaaagtaagttgttttaaggaaaaaggcttcttttgacatttagtcaaattttagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caaaaagtaagttgttttaaggaaaaaggcttcttttgacatttagtcaaattttagtct 739
Query: 121 ttcaggaaacaggccattctttgacagaaaaatatgttactgccagaggatatggattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttcaggaaacaggccattctttgacagaaaaatatgttactgccagaggatatggattcc 679
Query: 181 tctgctatattttgcaagttttctattttctcagcacagaaggaacagatggaaataaag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tctgctatattttgctagttttctattttctcagcacagaaggaacagatggaaataaag 619
Query: 241 ctgatccaatgaaatagtttcttttacattccagcaataaggaaaactaaaattcaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgatccaatgaaatagtttcttttacattccagcaataaggaaaactaaaattcaatga 559
Query: 301 aacagtctaaccaaatttaccacatagagaggtaggcattttggaaactttatagaaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacagtctaaccaaatttaccacatagagaggtaggcattttggaaactttatagaaagt 499
Query: 361 ataaaaccaagaaaaatcatatgaattattaaaataatatttaccttttcatttcctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ataaaaccaagaaaaatcatatgaattattaaaataatatttaccttttcatttcctttt 439
Query: 421 agacaactttatagttgttatttgtactgttctctaaatacccatagtctctgaatatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agacaactttatagttgttatttgtactgttctctaaatacccatagtctctgaatatga 379
Query: 481 atgcaaatgaagctatactgtttatttaaaaatgatgtttaggtttcttacagtttcaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgcaaatgaagctatactgtttatttaaaaatgatgtttaggtttcttacagtttcaca 319
Query: 541 ctcaaaataaataataccaaagtgagtcctgaccataccatttgtaaaaagagaatatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcaaaataaataataccaaagtgagtcctgaccataccatttgtaaaaagagaatatga 259
Query: 601 gctctctgagatttctatggtaatatagtcatttagtgagcatttcatggtcctgttc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctctctgagatttctatggtaatatagtcatttagtgagcatttcatggtcctgttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
