BAC Information

Click to search

BAC

Clone NameMSMg01-181G19
Chromosome5 (Build37)
Map Location 19,113,350 - 19,285,443
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181G19.T7 (MSMg01no181_g19.b1)MSMg01-181G19.TJ (MSMg01no181_g19.g1)
ACCAG374605AG374606
length746741
length of high quality
(start - end)
533 (38 - 570)658 (69 - 726)
definitionCHROMAT_FILE: MSMg01no181_g19.b1 PHD_FILE: MSMg01no181_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:53 2005CHROMAT_FILE: MSMg01no181_g19.g1 PHD_FILE: MSMg01no181_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,113,350 - 19,113,877)(19,284,786 - 19,285,443)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCA
CAAAATATACACAATTTATTGACCCTTGTTCAAAGACAAAGTGTGCTGCC
CAGAATACTTGAACTGTGTTTCGTTTTATTGCTCCCTCGAGAAGCATTTT
GTCATTGATTATACATTTTGGACTGTCAAAACCTGGATTTCATTAATGCT
GGGTCTATTTTATGATAACACTCTGAATTTGGAATATTAACACCAGCATA
TGCATCTAAACAGATGTGTCATATAAAGCAATTGAACGTTAAGGAAGGTC
ACTGTGTGGTTTTGGGAGTAGTCAACAGGTTCAGAGCCTGTGAGAGAAAC
ACAGTCATGCCTGAGTCACATTCCATAGCTAACTCTGAACTGCAGAGAAG
TGAGAAAGATGACCTACACTCCAATTCCCTGGCGCGATACTCCCTCTTCC
TCTCCCAGCATGTAATTACAAAAGTTCCTCAATATTCATGAGCAGGAAGC
CTCGGGTACCAAGAAAATATCATGAGATTTGTTTTACCTGGAGATTTATA
CCTTTTTAACCTATCTGCATAGTGTGCTCTATGTAAGGTGCTGCAGTAGC
TTTACAGACTAAGCTTACTGTCTTGGAGACTTACAGGGCACCGTGTTTCA
GGCCACTGTTTAAACTACACCTGCTCCGTTGCTTGACCATCTTTGACAGC
TTCTCCGATAACCACAACTTTCTATTTTCATGTTTATATCATTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGTGGTAAGAGGATTCACATTCACAATACA
GGAAATTAAACGATCATTTCTTGTCAAACAAAAAGTAAGTTGTTTTAAGG
AAAAAGGCTTCTTTTGACATTTAGTCAAATTTTAGTCTTTCAGGAAACAG
GCCATTCTTTGACAGAAAAATATGTTACTGCCAGAGGATATGGATTCCTC
TGCTATATTTTGCAAGTTTTCTATTTTCTCAGCACAGAAGGAACAGATGG
AAATAAAGCTGATCCAATGAAATAGTTTCTTTTACATTCCAGCAATAAGG
AAAACTAAAATTCAATGAAACAGTCTAACCAAATTTACCACATAGAGAGG
TAGGCATTTTGGAAACTTTATAGAAAGTATAAAACCAAGAAAAATCATAT
GAATTATTAAAATAATATTTACCTTTTCATTTCCTTTTAGACAACTTTAT
AGTTGTTATTTGTACTGTTCTCTAAATACCCATAGTCTCTGAATATGAAT
GCAAATGAAGCTATACTGTTTATTTAAAAATGATGTTTAGGTTTCTTACA
GTTTCACACTCAAAATAAATAATACCAAAGTGAGTCCTGACCATACCATT
TGTAAAAAGAGAATATGAGCTCTCTGAGATTTCTATGGTAATATAGTCAT
TTAGTGAGCATTTCATGGTCCTGTTCAATCCACAGCACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_g19.b1 MSMg01no181_g19.b1 CHROMAT_FILE:
MSMg01no181_g19.b1 PHD_FILE: MSMg01no181_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:53 2005
         (533 letters)



>mm_chr5_19113144_19114077
          Length = 934

 Score =  990 bits (512), Expect = 0.0
 Identities = 524/528 (99%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacaaaatatacacaatttattgacccttgttcaaagacaaagtgtgctgcccag 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacaaaatatacataatttattgacccttgttcaaagacaaagtgtgctgcccag 266

                                                                       
Query: 67  aatacttgaactgtgtttcgttttattgctccctcgagaagcattttgtcattgattata 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatacttgaactgtgtttcgttttattgctccctcgagaagcattttgtcattgattata 326

                                                                       
Query: 127 cattttggactgtcaaaacctggatttcattaatgctgggtctattttatgataacactc 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 327 cattttggactgtcaaaacctggatttcattaatgctgggtctattttatgatagcactc 386

                                                                       
Query: 187 tgaatttggaatattaacaccagcatatgcatctaaacagatgtgtcatataaagcaatt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgaatttggaatattaacaccagcatatgcatctaaacagatgtgtcatataaagcaatt 446

                                                                       
Query: 247 gaacgttaaggaaggtcactgtgtggttttgggagtagtcaacaggttcagagcctgtga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaacgttaaggaaggtcactgtgtggttttgggagtagtcaacaggttcagagcctgtga 506

                                                                       
Query: 307 gagaaacacagtcatgcctgagtcacattccatagctaactctgaactgcagagaagtga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagaaacacagtcatgcctgagtcacattccatagctaactctgaactgcagagaagtga 566

                                                                       
Query: 367 gaaagatgacctacactccaattccctggcgc-gatactccctcttcctctcccagcatg 425
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 567 gaaagatgagctacactccaattccctggcgccgatactccctcttcctctcccagcatg 626

                                                                       
Query: 426 taattacaaaagttcctcaatattcatgagcaggaagcctcgggtaccaagaaaatatca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taattacaaaagttcctcaatattcatgagcaggaagcctcgggtaccaagaaaatatca 686

                                                           
Query: 486 tgagatttgttttacctggagatttatacctttttaacctatctgcat 533
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgagatttgttttacctggagatttatacctttttaacctatctgcat 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no181_g19.g1 MSMg01no181_g19.g1 CHROMAT_FILE:
MSMg01no181_g19.g1 PHD_FILE: MSMg01no181_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:53 2005
         (658 letters)



>mm_chr5_19284586_19285643
          Length = 1058

 Score = 1265 bits (654), Expect = 0.0
 Identities = 657/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtggtaagaggattcacattcacaatacaggaaattaaacgatcatttcttgtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attgtggtaagaggattcacattcacaatacaggaaattaaacgatcatttcttgtcaaa 799

                                                                       
Query: 61  caaaaagtaagttgttttaaggaaaaaggcttcttttgacatttagtcaaattttagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caaaaagtaagttgttttaaggaaaaaggcttcttttgacatttagtcaaattttagtct 739

                                                                       
Query: 121 ttcaggaaacaggccattctttgacagaaaaatatgttactgccagaggatatggattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttcaggaaacaggccattctttgacagaaaaatatgttactgccagaggatatggattcc 679

                                                                       
Query: 181 tctgctatattttgcaagttttctattttctcagcacagaaggaacagatggaaataaag 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tctgctatattttgctagttttctattttctcagcacagaaggaacagatggaaataaag 619

                                                                       
Query: 241 ctgatccaatgaaatagtttcttttacattccagcaataaggaaaactaaaattcaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgatccaatgaaatagtttcttttacattccagcaataaggaaaactaaaattcaatga 559

                                                                       
Query: 301 aacagtctaaccaaatttaccacatagagaggtaggcattttggaaactttatagaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacagtctaaccaaatttaccacatagagaggtaggcattttggaaactttatagaaagt 499

                                                                       
Query: 361 ataaaaccaagaaaaatcatatgaattattaaaataatatttaccttttcatttcctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ataaaaccaagaaaaatcatatgaattattaaaataatatttaccttttcatttcctttt 439

                                                                       
Query: 421 agacaactttatagttgttatttgtactgttctctaaatacccatagtctctgaatatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agacaactttatagttgttatttgtactgttctctaaatacccatagtctctgaatatga 379

                                                                       
Query: 481 atgcaaatgaagctatactgtttatttaaaaatgatgtttaggtttcttacagtttcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgcaaatgaagctatactgtttatttaaaaatgatgtttaggtttcttacagtttcaca 319

                                                                       
Query: 541 ctcaaaataaataataccaaagtgagtcctgaccataccatttgtaaaaagagaatatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcaaaataaataataccaaagtgagtcctgaccataccatttgtaaaaagagaatatga 259

                                                                     
Query: 601 gctctctgagatttctatggtaatatagtcatttagtgagcatttcatggtcctgttc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctctctgagatttctatggtaatatagtcatttagtgagcatttcatggtcctgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)