Query= MSMg01no181_k03.b1 MSMg01no181_k03.b1 CHROMAT_FILE:
MSMg01no181_k03.b1 PHD_FILE: MSMg01no181_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:08 2005
(536 letters)
>mm_chr5_132879352_132880286
Length = 935
Score = 967 bits (500), Expect = 0.0
Identities = 515/520 (99%), Gaps = 1/520 (0%)
Strand = Plus / Plus
Query: 17 gaattcacttagctctcgcgctaccctctcccttgctgttatttatttttgtgtatttca 76
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcacttagctct-gcgctaccctctcccttgctgttatttatttttgtgtatttca 275
Query: 77 ctagaagcaacattcgtcaacatggcagcagagaagccgcaagccagggagaactgtttt 136
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctagaagcaacatttgtcaacatggcagcagagaagccgcaagccagggagaactgtttt 335
Query: 137 tttatataaaacaaataacttaagccgtacaggagcggttttgaataaagctgccatatg 196
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttgtataaaacaaataacttaagccgtacaggagcggttttgaataaagctgccatatg 395
Query: 197 aaaggccaaactggtgagctcctgcgctgtcttcagcagctgctttagcacccaaagaag 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaaggccaaactggtgagctcctgcgctgtcttcagcagctgctttagcacccaaagaag 455
Query: 257 caaatgtgtcggagcagggaaggctcagacggctatttacatgaacagctgaaatacaac 316
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caaatgtggcggagcagggaaggctcagacggctatttacatgaacagctgaaatacaac 515
Query: 317 cgcatggtccagcaacagtcaaagcaagacaggaaagggtggaaggcaaggcctacaaga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cgcatggtccagcaacagtcaaagcaagacaggaaagggtggaaggcaaggcctacaaga 575
Query: 377 agtgagatggcaatctgcatataataagtaatgggacatttttctttagaaggtgatgaa 436
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agtgagatgggaatctgcatataataagtaatgggacatttttctttagaaggtgatgaa 635
Query: 437 aacatcttaaaattgaccatggtggtatgtgtcctgctctgtcaataatactaacagcca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aacatcttaaaattgaccatggtggtatgtgtcctgctctgtcaataatactaacagcca 695
Query: 497 cagatctatatactttatgtgggtgaattcaattcatgaa 536
||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cagatctatatactttatgtgggtgaattcaattcatgaa 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_k03.g1 MSMg01no181_k03.g1 CHROMAT_FILE:
MSMg01no181_k03.g1 PHD_FILE: MSMg01no181_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:08 2005
(377 letters)
>mm_chr5_133028418_133029194
Length = 777
Score = 721 bits (373), Expect = 0.0
Identities = 376/377 (99%)
Strand = Plus / Minus
Query: 1 ccttattttgcactttattaactgggccatctttccaggctctgggaaaagaggaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccttattttgcactttattaactgggccatctttccaggctctgggaaaagaggaggaaa 518
Query: 61 atcctaaatactgcaataaggagaaaacattgtgcagagaagaggaaaccatagcagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atcctaaatactgcaataaggagaaaacattgtgcagagaagaggaaaccatagcagtaa 458
Query: 121 ccaggatggtgacagacaagccaaagacttgataaagtctttggatagcaatggtatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccaggatggtgacagacaagccaaagacttgataaagtctttggatagcaatggtatcta 398
Query: 181 ataataggatagttgctggaccagagtgtgtggaaagtgaactgtacaagaaattccact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ataataggatagttgctggaccagagtgtgtggaaagtgaactgtacaagaaattccact 338
Query: 241 ttaaatggcaagaataatatactatagatttgaagagggctggtgagatggctcagttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaaatggcaagaataatatactatagatttgaagagggctggtgagatggctcagttga 278
Query: 301 taacatgcctgactcaagtccaattcctaggactcacataaacagaagtagggcatgggg 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taacatgcctgactcaagttcaattcctaggactcacataaacagaagtagggcatgggg 218
Query: 361 gaggggggtaggcttgt 377
|||||||||||||||||
Sbjct: 217 gaggggggtaggcttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
