BAC Information

Click to search

BAC

Clone NameMSMg01-181N16
Chromosome5 (Build37)
Map Location 132,537,150 - 132,537,512
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181N16.T7 (MSMg01no181_n16.b1)MSMg01-181N16.TJ (MSMg01no181_n16.g1)
ACCAG374907AG374908
length817768
length of high quality
(start - end)
---371 (45 - 415)
definitionCHROMAT_FILE: MSMg01no181_n16.b1 PHD_FILE: MSMg01no181_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:25 2005CHROMAT_FILE: MSMg01no181_n16.g1 PHD_FILE: MSMg01no181_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCAGTGGGAGGCCTGGGGGNCGCCTGTTTCCCACNCCGANGNGAANN
ANAGAAGTTACCGGAGGGAGAGGGGCCANAGGCANNACNCAACAAANNCA
AGGAGAAGAGATTTTTGCCCCAGAGAAAGGGANNGNGACNCGAACNNACG
GANGANNNCAGNACCNNNGAAAACCCCNCNNCCCNCAANGGAGAAANAAC
ACAAAAAAGCCCGAAGCACACAAAGAAAAAACCGGGGGAAAAAAGGATTT
TTTTTTGNACTTTAACAGATTTTAGAGAAAGAAATGGCTAGATTTTATTT
CCGAGGGAGGGGATTTTAATGCTTTAACCACACCCCCACAAACCCCAAAG
AGCTTTTTTTTTTCCCCCCCCCCCCCCCCGANAATATATGTATGTAGACC
CACTCTCTAACCCCCCTTCCAAAAAAAAAAAAAAAAACAATATTACCCCC
GCGTTTTGTTTTTTTCCCCCCCCCCTTTTTTCTATGTATTATTATAGATA
TCTTTACTCCTGTGACCACTTCACTAATACTAACTCTTTCCAATTTTTTT
TACCCTTTTTCCCCCCCTTTTTTTTTTTTCACTCCCTCCCCTTTTTTATG
TTTTTCCCCCCCTTTTATTAAAACCCCACATACCATTCTCCACCATCCCT
ATTTTTATTATCCCCCCCCCCCCCCTCCCCCCCCCTATCTTTTTTTTTAG
AAACAACAAGACACCGCTTTTTTTTTTTTTTTTGTCCACTATAAATACAA
CCAAAACCCCCCCACCCCTCTTTTNGATCGGCAAGTTATTTATTACTATC
TGACCACATATTAATAG
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCACCCACCCACAAAACAAAATGAACATACCACCAACTCTGACA
TACCACAAAACCCCGCACTGAGCTGTGGCCAGAAAACGTGCATGCATTGA
ATAACTCAACTAATTTTTTATTTGAATTGCCTACAAATTGCCTATATGGC
AATTTTTACCACTGGGATATGTGTGAAGCCAAATATGACAAGGACAAAAC
AAGACATACTACATTCTCATGTCTAGAGGGTTAACATAAGACAACCAGTT
ACCAACAAGCTGGCTTCATTTTTACACCAATGTTCACAAATGTTGGATGT
CCTGAAATATGAGTTTTCAATAATGGCACATAACTCACTTAATCTTATTA
TTTACTTGACAATCGCCCCCCGCGTGTGTGTGAGCTATTTTAACCACCTT
TCCCTAAATCATAATCTTTCCTCCTCCCTCAAACACAAAACATACCTTAT
TTTTTATGTATCCCTATACTCAATCTTACTTCTCCTTTTTTTTTTAATTC
TTTACTTTCTTCATCTATTTATCTCCCCACCTCCCTCCTTTTTTTTCTCC
CATTTATTCAATTTCCTCCTCCTTTTATCTTCCTCTACTCTCCTCCTATT
TTAATTTCCCCCTTTTTTTTTTCTTATCCTCCCCTCCTCCTCTATTTTTT
TTTATCTTTTATCCCCCCCACCTTTAATTATTATTTCCCTCCCTCTTCTC
TATCACCCCAGATTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_n16.g1 MSMg01no181_n16.g1 CHROMAT_FILE:
MSMg01no181_n16.g1 PHD_FILE: MSMg01no181_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:25 2005
         (371 letters)



>mm_chr5_132536946_132537716
          Length = 771

 Score =  601 bits (311), Expect = e-176
 Identities = 350/363 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctccacccacccacaaaacaaaatgaacataccaccaactctgacataccacaa 64
           |||||||||||||||  ||||||| |||||||||  ||||||||||||||  ||| ||||
Sbjct: 205 gaattcctccacccaaacacaaaagaaaatgaacgcaccaccaactctgatgtacaacaa 264

                                                                       
Query: 65  aaccccgcactgagctgtggccagaaaacgtgcatgcattgaataactcaactaattttt 124
           ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 aaccctgcactgagctgtgaccagaaaacgtgcgtgcattgaataactcaactaattttt 324

                                                                       
Query: 125 tatttgaattgcctacaaattgcctatatggcaatttttaccactgggatatgtgtgaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttgaattgcctacaaattgcctatatggcaatttttaccactgggatatgtgtgaag 384

                                                                       
Query: 185 ccaaatatgacaaggacaaaacaagacatactacattctcatgtctagagggttaacata 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 ccaaatatgacaaggacaaaacaagacatactacattctcacgtctagagggttaacata 444

                                                                       
Query: 245 agacaaccagttaccaacaagctggcttcatttttacaccaatgttcacaaatgttggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacaaccagttaccaacaagctggcttcatttttacaccaatgttcacaaatgttggat 504

                                                                       
Query: 305 gtcctgaaatatgagttttcaataatggcacataactcacttaatcttattatttacttg 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcctgaaatacgagttttcaataatggcacataactcacttaatcttattatttacttg 564

              
Query: 365 aca 367
           |||
Sbjct: 565 aca 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)