Query= MSMg01no182_d09.b1 MSMg01no182_d09.b1 CHROMAT_FILE:
MSMg01no182_d09.b1 PHD_FILE: MSMg01no182_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:53 2005
(579 letters)
>mm_chr5_126483949_126484927
Length = 979
Score = 874 bits (452), Expect = 0.0
Identities = 488/500 (97%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 5 gaattctgaagtatcacgagtcgctagtagctggcctgctgatgaatcagcagtctcaat 64
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 499 gaattctgaagtagcacgagtcgctagtcgctggcctgctgatgaatcagcattctcaat 440
Query: 65 ggcttcttttacgtgcttctgtatagaggccctggtggtatgagcgctcactggccaatc 124
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcttcttttatgtgcttctgtacagaggccctggtggtatgagcgctcactggccaatc 380
Query: 125 caatgtaatgtgctaaccaagcacagtctataggcttccactatgtaagtagttgttcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caatgtaatgtgctaaccaagcacagtctataggcttccactatgtaagtagttgttcac 320
Query: 185 gtataataaagcagacactgttccctgaaactgtctcaagtggttcatttccacacccct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atataataaagcagacactgttccctgaaactgtctcaagtggttcatttccacacccct 260
Query: 245 tgctgtcccacgggaacggcagtcttgtcaggggacaccctggtaacggtggtggcagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgctgtcccacgggaacggcagtcttgtcaggggacaccctggtaacggtggtggcagag 200
Query: 305 gacccaggttcacttcccagcaccacatgggaagtaactatctgtagccccagttccagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gacccaggttcacttcccagcaccacatgggaagtaactatctgtagccccagttccagg 140
Query: 365 ggatccaacgccccccaggctctagggatacgctgaacaggacattcatggagaaaaa-t 423
||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |
Sbjct: 139 ggatccagtgccccccaggctctaggcatacgctgaacag-acattcatggagaaaaaat 81
Query: 424 aaaacacatacaacacaataaaaaatgattgatcacttcaaagatggatggcaacagaag 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 80 aaaacacatacaacacaataaaaaatgattgatcacttcaaagatgcatggcaacagaag 21
Query: 484 gagttgttcagaggtagaat 503
||||||||||||||||||||
Sbjct: 20 gagttgttcagaggtagaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_d09.g1 MSMg01no182_d09.g1 CHROMAT_FILE:
MSMg01no182_d09.g1 PHD_FILE: MSMg01no182_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:53 2005
(284 letters)
>mm_chr5_126341332_126342013
Length = 682
Score = 503 bits (260), Expect = e-147
Identities = 278/284 (97%), Gaps = 2/284 (0%)
Strand = Plus / Plus
Query: 1 actggaggttcaactgaataggctgtccaaggtggatcctgcacagtgatggtccccatt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaggttcaactgaatgggctgtccaaggtggatcctgcacagtgatggtccccatt 260
Query: 61 gctcactgatggctagcaggttggcagagactctctctggagcacctctacaggatacat 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcactgatgactagcaggttggcagagactctctctggagcacctctacaggatacat 320
Query: 121 aaaagacacataaaagcagtggacgcacccatatatggaattttattttaaaaaaagaaa 180
||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct: 321 aaaagacacataaaagcagtggaagcacccatatatgga-tttt-ttttaaaaaaagaaa 378
Query: 181 aggaaacaaagaaacaaagaaagctgagcatccttcacatccgcagtgtgaccatctacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 379 aggaaacaaagaaacaaagaaagctgagcatccttcacatccgcagtgtgatcatctacc 438
Query: 241 tcacactccagctgctgtgtgttccctgccttgatggatggtac 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcacactccagctgctgtgtgttccctgccttgatggatggtac 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space: 185075
Effective search space used: 185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
