Query= MSMg01no182_g01.b1 MSMg01no182_g01.b1 CHROMAT_FILE:
MSMg01no182_g01.b1 PHD_FILE: MSMg01no182_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:06 2005
(461 letters)
>mm_chr5_75544667_75545527
Length = 861
Score = 814 bits (421), Expect = 0.0
Identities = 448/457 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagcccttctgctgaagaccagttacagccaccaaagccattacctgtgaaaat 64
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 661 gaattcaagcccttctgttgaagaccagttacaaccaccaaagccgttacctgtgaaaat 602
Query: 65 tcacattcaaacaaacttgttaatttctttcaaataaagacgccgcgggcaagtcgggat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 601 tcacattcaaacaaacttgttaatttctttcaaataaagacgccgcgggcaagtcgagat 542
Query: 125 gcaaggggcgggtgtgtgtgtctggtttcttgtttgaaaataacggggcatttggtctag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcaaggggcgggtgtgtgtgtctggtttcttgtttgaaaataacggggcatttggtctag 482
Query: 185 agcaaaagaaaaagcctttgactgcccctttaactcctgattgcgtcgggaggaggttcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcaaaagaaaaagcctttgactgcccctttaactcctgattgcgtcgggaggaggttcc 422
Query: 245 tcccagggctgggggagcctggagcaggctggagatgcggcaaccagatgttggagtccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcccagggctgggggagcctggagcaggctggagatgcggcaaccagatgttggagtccc 362
Query: 305 tgcggagagatggagcagggctccaccccaactctgaagcagccagagctgaggggtagt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcggagagatggagcagggctccaccccaactctgaagcagccagagctgaggggtagc 302
Query: 365 ccactctctccccaagagaaaaaggcgctctgcagaatccagaggactagtataaccagt 424
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccactctcgcaagaagagaaaaaggcgctctgcagaatccagaggactagtataaccagt 242
Query: 425 taccctctctccacgacttgtcgcctacctcctcagc 461
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 taccctctctccacgacttgtcgcctacctcctcagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_g01.g1 MSMg01no182_g01.g1 CHROMAT_FILE:
MSMg01no182_g01.g1 PHD_FILE: MSMg01no182_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:06 2005
(523 letters)
>mm_chr5_75447028_75447950
Length = 923
Score = 804 bits (416), Expect = 0.0
Identities = 489/522 (93%), Gaps = 18/522 (3%)
Strand = Plus / Plus
Query: 5 gggaaaaaggcatttaagctgacgacatgctaaagtaaagtatgcggtggggaaggatag 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 217 gggaaaaaggcatttaagctgacgacatgctaaagtaaagtatgctgtggggaaggatag 276
Query: 65 ctttatttaaaaaaaaaaaaaaaaaaaaaaagagggagtagctccagtcagtgagaaaat 124
|||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 277 ctttattt------------aaaaaaaaaaagaggaagtagttccagtcagtgagaaaat 324
Query: 125 cacaattaaagcccctgaggttggaaagaagccagccaaggccagggaggaggccatgac 184
||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||
Sbjct: 325 cacaattaaagcccctgaggtcggaaagaagctagccaaggccagggagtaggccataac 384
Query: 185 gagaagagccaaatctgagatcaagccagcaaagttggtggaaatttggcctttgaaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaagagccaaatctgagatcaagccagcaaagttggtggaaatttggcctttgaaaca 444
Query: 245 ggtctgaaggtcatcctaaaaataaggatgaagagggtgtggatccaggcagtgacacgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtctgaaggtcatcctaaaaataaggatgaagagggtgtggatccaggcagtgacacgg 504
Query: 305 tcaggtgtgcacttgtgagtctcccagaggagaaccccaggggccccaccca-ctctgca 363
||||||||||||||||||||| |||||||||||| ||||||||||||||| | | |||||
Sbjct: 505 tcaggtgtgcacttgtgagtcccccagaggagaagcccaggggccccacctaac-ctgca 563
Query: 364 agcatcaccctcacctaccaccaccaggacactatgacttttggtaattcatatatctcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcatcaccctcacctaccaccaccaggacactatgacttttggtaattcatatatctcc 623
Query: 424 attttcaagtgcagcttttccgttggaccaaactgattgggtccctaattccacgaacat 483
||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct: 624 attttcaagtgcagcttttccgttggatcaaactgattgtatccctaattccactaacat 683
Query: 484 aca--tggggcctaaaatttgtagtatgagccccaagcccag 523
||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 684 acacatgg--cctaaaatttgtagtatgagcctcaagcccag 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
