BAC Information

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BAC

Clone NameMSMg01-183D23
Chromosome5 (Build37)
Map Location 60,018,059 - 60,018,387
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183D23.T7 (MSMg01no183_d23.b1)MSMg01-183D23.TJ (MSMg01no183_d23.g1)
ACCAG375898AG375899
length722757
length of high quality
(start - end)		333 (45 - 377)688 (70 - 757)
definitionCHROMAT_FILE: MSMg01no183_d23.b1 PHD_FILE: MSMg01no183_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:12 2005CHROMAT_FILE: MSMg01no183_d23.g1 PHD_FILE: MSMg01no183_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCATAAAATAATTGATTTATTTTATCATTAAATTGGTGACTATT
TTTTAAAACACTATATTTGCTTTGAAGAATGGTAGCACATGAGTCCTGCT
TCCTCCTTATTTTTACCTTCTTTCAACTTGGCTCCGGTTAACCTTTGCAA
CATGCTCAATGAGAAACTCCAGTGAACTATATCACCACACACAATTAATG
GATGAATGGTCTATAATAAATGAAAATGCAATCACTGCTTGGCAATTAGC
TTATGGATCATCTCCAACCACTTAGAAACTCCTCTGTCCACATTATTAAA
ATATGCTGGCTGGTTTAAATTACACTTAAAGACGGAGGCAATATTCAACT
ACTTAGGAGCTTCATTGTGGGGAATTGTCACCATTATGATTAACAGCCCT
TATGAAAAATAATTAATTTGGTATCTTGTTGCTAGGTCAACTATTAAATC
TATTTGCCCTGAGGAAAAGACTGTGTGTGCCAGTGCAAATTCTTTTAAAT
GTGTGACCCTCATACATGAATGCTACCCCTTTAAGAAAAAGTTTTAAAAC
TTAAGCACAGCAAATATATCTCCAGTATTAAGCTAGAATTTTAAAAAGAA
NAAAAAAGAACAAAATGAAATACTCTGTCATTTATTTTCCTTGCTAAAAG
AACATAGTGACAGGTAAAAAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAGGAAGAAG
CAGCTCATTACCAGCCAGCTCATCGGTCAAGAAAAAAGCCAAAAGCGGCT
GGCGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAGTCGGCTTCAAGGTCC
GCCCTATGCAGAGCCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGA
GACGATGCGCAGAGAGGCAATGCGCAGAGAGACAATGCGCAGAGAGGCAA
TGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGC
ATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAG
AATACGTGCAGATTAAAGAACTCGCCGAGTCGGTCCATAAATACGGAACC
AATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACT
AACTCCTGCCGACTGGCAAAGGATTGTAAAAGCCGCTCTCCCTAGTATGG
GCAAATATATGGAATGGAGAGCGCTTTGGCACGAGGCTGCACAAGCGCAG
GCCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTT
TGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAACTACC
ATTGGGGAGCTTATGCCCAAATTTCCTCCACGGCTATTAGGGCCTGGAAG
GCGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_d23.b1 MSMg01no183_d23.b1 CHROMAT_FILE:
MSMg01no183_d23.b1 PHD_FILE: MSMg01no183_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:12 2005
         (333 letters)



>mm_chr5_60017855_60018587
          Length = 733

 Score =  613 bits (317), Expect = e-180
 Identities = 326/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatccataaaataattgatttattttatcattaaattggtgactattttttaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatccataaaataattgatttattttatcattaaattggtgactattttttaaaa 264

                                                                       
Query: 65  cactatatttgctttgaagaatggtagcacatgagtcctgcttcctccttatttttacct 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactatatttgctttgaagtatggtagcacatgagtcctgcttcctccttatttttacct 324

                                                                       
Query: 125 tctttcaacttggctccggttaacctttgcaacatgctcaatgagaaactccagtgaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctttcaacttggctccggttaacctttgcaacatgctcaatgagaaactccagtgaact 384

                                                                       
Query: 185 atatcaccacacacaattaatggatgaatggtctataataaatgaaaatgcaatcactgc 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatcaccacacacaattaatggatgaatggtctataataaatgaaaatgcaatcactgc 444

                                                                       
Query: 245 ttggcaattagcttatggatcatctccaaccacttagaaactcctctgtccacattatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggcaattagcttatggatcatctccaaccacttagaaactcctctgtccacattatta 504

                                        
Query: 305 aaatatgctggctggtttaaattacactt 333
           ||||||||| |||||||||||||||||||
Sbjct: 505 aaatatgctagctggtttaaattacactt 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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