BAC Information

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BAC

Clone NameMSMg01-183H05
Chromosome5 (Build37)
Map Location 24,817,158 - 24,817,446
singlet/doubletsinglet
Overlap geneMll3
Upstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183H05.T7 (MSMg01no183_h05.b1)MSMg01-183H05.TJ (MSMg01no183_h05.g1)
ACCAG376035AG376036
length749735
length of high quality
(start - end)
449 (46 - 494)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no183_h05.b1 PHD_FILE: MSMg01no183_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:28 2005CHROMAT_FILE: MSMg01no183_h05.g1 PHD_FILE: MSMg01no183_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGACCTCTACCAAGAGCAGACAGTGCTCTTAACTGCTGAGTCAA
CTCCCCAGTCCCTAGTGTTTTCAGCCTTAAAGGATGAGCCTAATTTAGGA
TTGTACTGTGATATAAATTTTCTCACTTGCTTACTTACTTATTTATTTGT
TTATTTTCAAGACAGGATCTTACTGTGTATCTTTAGCTGTCCTGGAACTC
ACTATGTAGACCCAAGCTACCTCTGCCTCCCAAGTGCTGGGATTAAAGAA
AGACCTGCAACACTATGTCCAGGATTTTTTTTTAATTATTAAAAATATAA
ACTAGAGCTGGGCAGTGGTGGTGCATGCTTTTAATCCCAGCACTTGAGAG
GCAGACATAGGGGAATTTCTGAGTTCTAGGCCAGCCTGGTCTACAGAGTG
AGTCCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACCA
AAAACCAAACCAAACTACACACACACATGTATGTATGTATGTATGCATGT
ATGTATGCCATGCTACCTACTTCTTTTTATCTTTACCTTCTTCCCTCCAT
CTCCTATTTTCTCATTCTCATCTCTTATTTAGCTGATTATCCTTTCTTTT
TTTATTCAATTTCTCTTCCCTTTTTCTCTACCTCCTTTATCTCTTCCTCT
ATTTTTTATATTTTATTTACCACTTCTCTTTCCATCCTCCACTTTTTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGATCCTTGTATTTGCTGAGGCACA
TGGAAGCGATCTTGGCTTGGCCTGGGACCATGGCCAGCTCCTGGAAATCC
AAATCTAAAAGCCAGAAACAACCAACAAATAATTAAGAATGATAATTTAG
AATTGAGATGAGAAAAGTAAAAGAAGTATTAAGTTACTCTACAGATTAAA
AAAAAAAAACTGTTAGTAAGCCCAATGATAGTGAAAATAGGAGTTGGAAG
AGAAAAACATGATATCAAAATACATTATACACACGTACACACTATATATA
CACACACACATAATCTTACACTTTATCTATTTATTTTATTATTATTATTA
TTTTTTTTTTTTTGGCTCCTCGAGGAAGGATATCTCTGTATAGCCCTGGC
TGTCCTGTAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC
GTCTGCCTCTGCCTCCTGAGTGCCGGGATTAAAGGCGTGTGCCACCACAC
CCGGTTATTTTTCTTTTATATAGATAAAACTACAAGCGTTTTGCCCTGTA
ATTGTACTGACCATGACCCTCATAACACCTACCGTACAGAATTTACTCTA
CCACGTTGGTTTCTTGTTCCCCCGTGTTGCTCTGCGCTTTTTTCTCTTTA
GCCACTATTTTTCGTTATGAAATGTCCCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_h05.g1 MSMg01no183_h05.g1 CHROMAT_FILE:
MSMg01no183_h05.g1 PHD_FILE: MSMg01no183_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:28 2005
         (288 letters)



>mm_chr5_24816958_24817646
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatccttgtatttgctgaggcacatggaagcgatcttggcttggcctgggaccatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cagatccttgtatttgctgaggcacatggaagcgatcttggcttggcatgggaccatggc 260

                                                                       
Query: 61  cagctcctggaaatccaaatctaaaagccagaaacaaccaacaaataattaagaatgata 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cagctcctggaaatccaaatctaaaagccagaaagaaccaacaaataattaagaatgata 320

                                                                       
Query: 121 atttagaattgagatgagaaaagtaaaagaagtattaagttactctacagatta-aaaaa 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atttagaattgagatgagaaaagtaaaagaagtattaagttactctacagattataaaaa 380

                                                                       
Query: 180 aaaaaactgttagtaagcccaatgatagtgaaaataggagttggaagagaaaaacatgat 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaactgttagtaagctcaatgatagtgaaaataggagttggaagagaaaaacatgat 440

                                                            
Query: 240 atcaaaatacattatacacacgtacacactatatatacacacacacata 288
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaaaatacattatacacacgtacacactatatatacacacacacata 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)