MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-183I12
Chromosome	5 (Build37)
Map Location	65,554,029 - 65,554,211
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5
Downstream gene	Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tbc1d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57915 MGI:1889508
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps22 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:595140
definition	note : peptidylprolyl isomerase A pseudogene 22 pseudo : _no_value

name	LOC433894 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042198 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042198
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Klf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16599 MGI:1342773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21897 MGI:1341295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21899 MGI:1341296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130005N14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68303 MGI:1915553
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem156 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243025 MGI:2685292
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Klhl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71778 MGI:1919028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213081 MGI:2443231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19687 MGI:97891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Klb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83379 MGI:1932466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20005 MGI:1298373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lias (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:79464 MGI:1934604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ugdh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22235 MGI:1306785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110003E01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68552 MGI:1915802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930589O11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78214 MGI:1925464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs

name	Hip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53323 MGI:1858216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9030416H16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71521 MGI:1918771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700022K14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74234 MGI:1921484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC384261 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384261
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein

name	B3bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333789 MGI:2684414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041809 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041809
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Rhoh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74734 MGI:1921984
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626641 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins pseudo : _no_value

name	EG666827 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666827 MGI:3643549
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Chrna9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231252 MGI:1202403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130230L23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231253 MGI:3041166
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	BC013481 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245945 MGI:2384294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tbc1d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120587002 GeneID:57915 MGI:1889508
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 1 transcript_id : NM_019636.2

name	LOC433894 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253935 GeneID:433894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC433894 transcript_id : XM_001478331.1

name	LOC100042198 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253937 GeneID:100042198
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042198 transcript_id : XM_001478341.1

name	Klf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802499 GeneID:16599 MGI:1342773
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kruppel-like factor 3 (basic) transcript_id : NM_008453.3

name	Tlr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13507602 GeneID:21897 MGI:1341295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 1 transcript_id : NM_030682.1

name	Tlr6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58743328 GeneID:21899 MGI:1341296
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 6 transcript_id : NM_011604.2

name	9130005N14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560127 GeneID:68303 MGI:1915553
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9130005N14 gene transcript_id : NM_026667.2

name	Tmem156 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253910 GeneID:243025 MGI:2685292
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : transmembrane protein 156 transcript_id : XM_144292.7

name	Klhl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892613 GeneID:71778 MGI:1919028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch-like 5 (Drosophila) transcript_id : NM_175174.3

name	Wdr19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23510248 GeneID:213081 MGI:2443231
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 19 transcript_id : NM_153391.1

name	Rfc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755305 GeneID:19687 MGI:97891
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : replication factor C (activator 1) 1 transcript_id : NM_011258.1

name	Klb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130737 GeneID:83379 MGI:1932466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : klotho beta transcript_id : NM_031180.2

name	Rpl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14149646 GeneID:20005 MGI:1298373
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L9 transcript_id : NM_011292.1

name	Lias (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376612 GeneID:79464 MGI:1934604
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipoic acid synthetase transcript_id : NM_024471.3

name	Ugdh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981926 GeneID:22235 MGI:1306785
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-glucose dehydrogenase transcript_id : NM_009466.2

name	1110003E01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801855 GeneID:68552 MGI:1915802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110003E01 gene transcript_id : NM_133697.3

name	4930589O11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253941 GeneID:78214 MGI:1925464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs product : RIKEN cDNA 4930589O11 gene transcript_id : XM_899432.3

name	Hip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118601007 GeneID:53323 MGI:1858216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : huntingtin interacting protein 2 transcript_id : NM_016786.3

name	9030416H16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486764 GeneID:71521 MGI:1918771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9030416H16 gene transcript_id : NM_001081321.1

name	1700022K14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253912 GeneID:74234 MGI:1921484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700022K14 gene transcript_id : XM_001477016.1

name	LOC384261 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94374788 GeneID:384261
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein product : hypothetical LOC384261 transcript_id : XM_986220.1

name	B3bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906815 GeneID:333789 MGI:2684414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl3 binding protein transcript_id : NM_001024917.1

name	LOC100041809 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253916 GeneID:100041809
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100041809 transcript_id : XM_001477042.1

name	Rhoh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487388 GeneID:74734 MGI:1921984
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ras homolog gene family, member H transcript_id : NM_001081105.1

name	EG666827 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374790 GeneID:666827 MGI:3643549
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG666827 transcript_id : XM_986287.1

name	Chrna9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487390 GeneID:231252 MGI:1202403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cholinergic receptor, nicotinic, alpha polypeptide 9 transcript_id : NM_001081104.1

name	BC013481 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342581 GeneID:245945 MGI:2384294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC013481 transcript_id : NM_178446.2

name	BC013481 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20532345 GeneID:245945 MGI:2384294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC013481 transcript_id : NM_139065.1

name	Tbc1d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120587003 GeneID:57915 MGI:1889508
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 note : tre-2/USP6, BUB2, cdc16) domain family, member 1 product : TBC1 domain family, member 1 protein_id : NP_062610.2

name	LOC433894 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253936 GeneID:433894
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478381.1

name	LOC100042198 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253938 GeneID:100042198
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478391.1

name	Klf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680582 CCDS:CCDS19301.1 GeneID:16599 MGI:1342773
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Kruppel-like factor 3 product : Kruppel-like factor 3 (basic) protein_id : NP_032479.1

name	Tlr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507603 CCDS:CCDS19302.1 GeneID:21897 MGI:1341295
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] [Evidence NAS]; GO:0045335 - phagocytic vesicle [Evidence NAS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] [Evidence NAS]; GO:0042497 - triacylated lipoprotein binding [Evidence NAS] GO_process : GO:0007250 - activation of NF-kappaB-inducing kinase [Evidence NAS]; GO:0042495 - detection of triacylated bacterial lipoprotein [Evidence NAS]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0042116 - macrophage activation [Evidence NAS]; GO:0002217 - physiological defense response [Evidence IMP]; GO:0045410 - positive regulation of interleukin-6 biosynthesis [Evidence IMP]; GO:0042535 - positive regulation of tumor necrosis factor-alpha biosynthesis [Evidence IMP] codon_start : 1 product : toll-like receptor 1 protein_id : NP_109607.1

name	Tlr6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58743329 CCDS:CCDS19303.1 GeneID:21899 MGI:1341296
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 exception : mismatches in translation product : toll-like receptor 6 protein_id : NP_035734.2

name	9130005N14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560128 CCDS:CCDS19304.1 GeneID:68303 MGI:1915553
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC68303 protein_id : NP_080943.2

name	Tmem156 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253911 GeneID:243025 MGI:2685292
definition	codon_start : 1 product : hypothetical protein protein_id : XP_144292.6

name	Klhl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30039720 CCDS:CCDS19305.1 GeneID:71778 MGI:1919028
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : kelch-like 5 protein_id : NP_780383.1

name	Wdr19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510249 GeneID:213081 MGI:2443231
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : WD repeat membrane protein PWDMP protein_id : NP_700440.1

name	Rfc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755306 GeneID:19687 MGI:97891
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : replication factor C, 140 kDa product : replication factor C 1 protein_id : NP_035388.1

name	Klb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13626032 CCDS:CCDS19306.1 GeneID:83379 MGI:1932466
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015926 - glucosidase activity [Evidence IEA] codon_start : 1 product : klotho beta protein_id : NP_112457.1

name	Rpl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14149647 GeneID:20005 MGI:1298373
definition	GO_component : GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 product : ribosomal protein L9 protein_id : NP_035422.1

name	Lias (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13277380 CCDS:CCDS19307.1 GeneID:79464 MGI:1934604
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0051538 - 3 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:0017140 - lipoic acid synthase activity [Evidence IPI]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0009107 - lipoate biosynthesis [Evidence IEA]; GO:0009105 - lipoic acid biosynthesis [Evidence IGI] codon_start : 1 product : lipoic acid synthetase protein_id : NP_077791.1

name	Ugdh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678499 CCDS:CCDS19308.1 GeneID:22235 MGI:1306785
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP] codon_start : 1 product : UDP-glucose dehydrogenase protein_id : NP_033492.1

name	1110003E01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526868 CCDS:CCDS19309.1 GeneID:68552 MGI:1915802
definition	codon_start : 1 product : hypothetical protein LOC68552 protein_id : NP_598458.1

name	4930589O11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897580 GeneID:78214 MGI:1925464
definition	codon_start : 1 product : hypothetical protein LOC78214 protein_id : XP_904525.1

name	Hip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542956 GeneID:53323 MGI:1858216
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence TAS]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : huntingtin interacting protein 2 protein_id : NP_058066.2

name	9030416H16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486765 GeneID:71521 MGI:1918771
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC71521 protein_id : NP_001074790.1

name	1700022K14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253913 GeneID:74234 MGI:1921484
definition	codon_start : 1 product : hypothetical protein LOC74234 protein_id : XP_001477066.1

name	LOC384261 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374789 GeneID:384261
definition	codon_start : 1 product : hypothetical protein protein_id : XP_991314.1

name	B3bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906816 CCDS:CCDS19310.1 GeneID:333789 MGI:2684414
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence ISS]; GO:0046404 - ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity [Evidence ISS]; GO:0004519 - endonuclease activity [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : Nedd4 binding protein 2 protein_id : NP_001020088.1

name	LOC100041809 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253917 GeneID:100041809
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477092.1

name	Rhoh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487389 GeneID:74734 MGI:1921984
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : ras homolog gene family, member H protein_id : NP_001074574.1

name	EG666827 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374791 GeneID:666827 MGI:3643549
definition	codon_start : 1 product : hypothetical protein protein_id : XP_991381.1

name	Chrna9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487391 GeneID:231252 MGI:1202403
definition	GO_component : GO:0005624 - membrane fraction [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007271 - synaptic transmission, cholinergic [Evidence IEA] codon_start : 1 product : cholinergic receptor, nicotinic, alpha 9 protein_id : NP_001074573.1

name	BC013481 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20532346 CCDS:CCDS19313.1 GeneID:245945 MGI:2384294
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC245945 protein_id : NP_620704.1

name	BC013481 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425362 CCDS:CCDS19313.1 GeneID:245945 MGI:2384294
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC245945 protein_id : NP_848541.1

name	LOC626641 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253918 GeneID:626641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins product : similar to 2410004L22Rik protein pseudo : _no_value transcript_id : XR_033040.1

name	9130230L23Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253942 GeneID:231253 MGI:3041166
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 9130230L23 gene transcript_id : XR_035361.1

clone name	MSMg01-489O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-526F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-157L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210B11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-183I12.T7 (MSMg01no183_i12.b1)	MSMg01-183I12.TJ (MSMg01no183_i12.g1)
ACC	AG376091	AG376092
length	724	727
length of high quality (start - end)	623 (70 - 692)	289 (73 - 361)
definition	CHROMAT_FILE: MSMg01no183_i12.b1 PHD_FILE: MSMg01no183_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:34 2005	CHROMAT_FILE: MSMg01no183_i12.g1 PHD_FILE: MSMg01no183_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:34 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG AATTCTTCTCACTGTCGCTACAAACATGCCCATTTTTTTGGTTTCTTTCT TGTTGTTTCCATAGTCTAATTTCCTAACACTTACATTTTAACACAGTGGT TCTCAACCTATCTGTCATGACCAATTGGAGGAGGTGCACAGAACAGGCTC ACACAAGTTGCCTAAGAAAGTCTGAAAACACTGATAGGACATTACAACTG ATAACATTATCAAACCTACAGTTATGGAGCAGCAACAAAAACAATTTTAT GGTTGGGAGGCACCACAACATGAGGAACTCTATTAAAGAAAGGGTCACAG CATTAGGGAGGTAGGGAAGCACTACCTAATACAGGGCCTGACAAGGAGTG AGGATATGAAGGAGATGACGCGACTGTTCAAGCTAGGTTTCTCTTCCCTG ACACTACTTGCAGTACTCAACCACAGGCACACACATCCAACATTTTCCTT CATAACAAGCAAATATGTTACTTATCAAATGGGGGAGAATTAACATTAGG GATGCTTTTTCTTCATAAGTGTTAGTTATTGGCTCTCCCCAAGAACACAC ATAAACTCCAGAACTCCAAAAACCCACAAAATCCTTTTGCATCCTCCTCT GTGGTCTATGTAAAGTTTTGCTAGATTCTTCCAGCAATGCAAAGGTATAG AGTTAATTTTTTGCTTGGTTGTGA	ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTTAGAATATCTAGGTGTGTTGGCAGAGT CCTTAAACTCTACCACTGGGAAAGAGATGTGGTGGGGAGATTATAAAGTT AGGCAAGCGTGGCGGTACTAAGTGGAAAACTCTATGCAGTTGGTGGTCGC GATGGGAGCTCTTGCCTCAAGTCAGTAGAATGCTTTGACCCTCATATCAA TAAATGGACACTGTGTGCCCAGATGTCAAAACGAAGAGGCGGAGTAGGAG TCACAACCTGGAACAGGCTGCTGTATGCCATTGGGGGACACGACGCTCCC ACATCCAATTTGTTCTCTCAGGCTCTCGCCCTGTGTGGAGAGATATGACC CCAAAACAGACGTGTGCACAGCAGTGGCATCCATGAGCGTTAGCAGAGAC GCGGTGGGCGTGTGTCTACTTGGTGACAAGCTGTATGCTGTCGGGGGTTA TGACGGACAGACCTACCTGAACATAGTGGAGGCTTACGACCCCCAGACCA ACGAATGGACCCAGGTTGCTCCGCTGTGCCTAGGAAGAGCTGGAGCCTGT GTTGCGACTGCGAAGATTTGACTTCATTCTTTGTCCTCCCTCTCCAAACG GACAGTCCTTCCCTTGGAATCATTCTTAACGGAATGTGGTGTGCCCCATT TCCTATTCTCAATTTGCTTTCTTTCCC
quality values	Open. Hide. 8 10 8 8 8 12 12 28 34 30 33 32 32 28 28 37 37 30 30 33 37 33 33 43 48 30 28 28 25 23 24 19 11 9 9 8 14 21 28 30 22 22 29 28 28 31 59 48 57 36 36 35 35 36 36 59 59 33 33 33 21 18 10 8 8 8 8 8 8 19 20 37 37 37 39 41 41 47 53 53 53 53 53 53 59 59 59 59 50 50 50 53 53 57 59 59 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 57 57 57 54 54 57 57 57 44 44 37 42 30 37 43 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 57 59 59 57 57 57 57 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 52 52 52 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 52 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 43 34 21 14 8 8 8 8 10 24 38 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 68 68 57 57 57 57 59 59 59 57 57 57 57 57 57 57 57 57 57 57 44 43 43 44 44 57 48 57 57 57 57 47 47 42 43 44 44 43 59 59 59 59 39 41 37 43 43 46 57 57 57 68 68 57 59 54 48 48 48 48 43 44 42 30 30 30 44 44 59 59 59 59 47 47 47 43 43 43 59 59 59 59 59 59 48 48 48 48 48 48 48 48 48 57 46 47 43 43 40 37 37 37 34 30 34 30 31 37 41 37 37 36 30 30 28 34 35 36 36 39 39 39 39 41 41 41 48 48 48 48 57 48 48 48 48 48 48 48 48 50 50 50 42 41 39 39 35 31 36 39 34 34 32 39 35 39 39 36 34 28 22 19 27 29 25 25 17 17 17 24 29 33 43 43 33 33 28 26 26 31 28 28 24 19 16 21 21 19 24 23 19 19 18 11 11 21 23 23 20 15 15 19 20 29 43 16 13 8 8 10 15 9 9 9 13 9 9 12 9	Open. Hide. 10 13 10 10 9 9 17 17 35 32 37 37 37 37 59 50 50 50 53 53 57 57 57 57 59 57 53 53 53 53 53 57 48 48 30 26 12 16 16 22 22 68 68 68 54 54 54 54 54 54 54 68 68 68 68 68 54 40 40 33 33 37 40 59 59 59 50 50 50 50 50 51 59 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 50 50 57 50 43 32 43 43 52 57 50 50 50 50 50 51 50 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 59 68 57 68 68 68 68 68 68 62 62 62 62 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 57 57 57 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 68 68 68 59 59 68 59 59 59 59 59 59 59 68 68 68 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 59 59 68 68 68 68 68 68 68 68 59 59 47 47 43 46 43 43 43 48 48 57 57 57 57 57 57 57 50 50 50 50 50 50 57 57 57 57 59 59 57 57 53 53 50 50 47 39 39 35 35 23 29 12 12 12 11 9 9 9 9 10 9 9 12 11 12 11 10 10 9 9 9 9 16 11 12 15 24 30 41 59 59 48 57 57 57 57 57 59 59 59 59 59 59 59 59 57 53 48 48 48 50 59 59 59 32 24 16 12 12 11 15 15 28 32 32 23 18 13 13 13 21 21 30 30 22 23 12 21 24 59 59 47 43 43 43 43 43 48 43 48 48 46 46 46 43 43 43 37 37 28 37 37 48 48 59 59 59 59 47 44 43 43 41 41 44 44 44 47 47 47 41 48 48 48 59 59 57 48 48 48 48 50 59 39 39 30 30 28 30 20 31 34 39 32 37 22 22 24 24 25 34 34 35 37 44 39 37 37 39 29 25 29 32 37 30 25 19 15 14 12 11 15 14 14 21 20 26 19 23 32 32 29 34 21 14 11 11 13 14 13 15 10 10 13 21 18 24 22 22 18 17 10 10 10 19 19 8 8 8 10 13 21 19 21 25 12 11 11 23 12 13 17 12 9 11 10 10 10 17 17 37 27 21 17 11 11 11 14 25 23 28 28 16 12 10 10 10 17 26 30 19 20 10 11 8 8 8 8 8 10 15 13 13 11 12 20 12 12 24 16 19 16 16 13 11 8 8 8 10 19 28 28 19 19 12 12 12 12 12 14 16 14 9 9 9 9 7 8 8 8 8 10 12 11 9 8 8 8 8 8 8 8 8 8 10 10 11 13 9 9 9 9 9 9 10 9 8 6 10 9 7 9 10 10 8 9 8 10 8 11 10 11 10 10 10 10 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 12 15 11 10 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no183_i12.g1 MSMg01no183_i12.g1 CHROMAT_FILE:
MSMg01no183_i12.g1 PHD_FILE: MSMg01no183_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:34 2005
         (289 letters)



>mm_chr5_65553723_65554411
          Length = 689

 Score =  339 bits (175), Expect = 2e-97
 Identities = 181/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 107 actctatgcagttggtggtcgcgatgggagctcttgcctcaagtcagtagaatgctttga 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actctatgcagttggtggtcgcgatgggagctcttgcctcaagtcagtagaatgctttga 366

                                                                       
Query: 167 ccctcatatcaataaatggacactgtgtgcccagatgtcaaaacgaagaggcggagtagg 226
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccctcataccaataaatggacactgtgtgcccagatgtcaaaacgaagaggcggagtagg 426

                                                                       
Query: 227 agtcacaacctggaacaggctgctgtatgccattgggggacacgacgctcccacatccaa 286
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtcacaacctggaacgggctgctgtatgccattgggggacacgacgctcccacatccaa 486

              
Query: 287 ttt 289
           |||
Sbjct: 487 ttt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information