BAC Information

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BAC

Clone NameMSMg01-184C20
Chromosome5 (Build37)
Map Location 33,175,051 - 33,327,727
singlet/doubletdoublet
Overlap geneLOC100040141, Depdc5
Upstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik
Downstream geneYwhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184C20.T7 (MSMg01no184_c20.b1)MSMg01-184C20.TJ (MSMg01no184_c20.g1)
ACCAG376541AG376542
length705717
length of high quality
(start - end)
305 (65 - 369)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no184_c20.b1 PHD_FILE: MSMg01no184_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:26 2005CHROMAT_FILE: MSMg01no184_c20.g1 PHD_FILE: MSMg01no184_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,175,051 - 33,175,351)(33,327,447 - 33,327,727)
sequence
NNNGTCTTTNNNNTTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCACTGCTCTAAACCACTGAGCCATCTC
ACCAGCCCAAGATAGATTTATGTATGTATGTATGTTATGTATGTATGTAT
ACATACCTACCTATCACAATAAACTGTCATTACAACAGTTATTATTCGAT
GATCATCTTATTACCTGAAAATAGATATAAATAAAATAGCTCTTTGAAAT
GGTTCTAAATCCAATGAGTTGTAACAACTGGCTTTCTGTAAGACTGGGCT
GATCACTCCTGAAGCTGAGTAACAGGAACATGCAAGCTCAGTTTACTCGA
TTCACTTCTGAGTTAGTATGAATTGGCCCTNAGACANTNACAAGNATAAA
ACAAAAATAACAACCAAGCCACCTTCAAAAAAAAATAAAAAGTATGGAGG
AGTTTTACTTCAGACACACCTATGATGCCAGCAGAAGGGAACAGAACAGG
AGCCCCAACCCAAGCTCAAAGCCAGCCACAACTCTGAAGCCCCTCAACTC
TATGGTACTAACTTTCCTAAACCCCAAGTTCTTCTGTAGAAAGCATGGTA
AGTACACGTATTTCAATGCTATAGAGGATTAAACAACACATGTAAATACT
GCCTGGAACAGTGCTTGCAGTATTTTCTCTTTGATTCTTTATTTAACTAC
ATATG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTGCATGTGTGCTTGGTGATAGC
AGTGGGAGGTGCAGGTGGGGAGATGGTGTGAGTAAAAGGCACATTGGGGT
GGTCTGCTGTGACAGACCTTTTCTGACAGAAGGAAGGGCTCTAACCTGAG
ATACAGCCCTGGAGACACACACAGGGAGCCTGGGACTTACAAAGCCTGCT
GCAACTTTGCACAAGAGGACACCGCTTCCTGTTTCGCTTTTGATGGTCTT
TCTAGGGACTCGCATGCAAAATGCTCTCCTCAAATTCAAGCAAGCACTGC
AGGTGGTTGTGAGTACACTCCANACCCANACGCCTGTAGAGATGGACAGC
GAACAATCCCCTTTCCCACCCACTGAAAAAAAAACACTGGCCTTGCGGAG
CTGGCAAAGTAGCTCTAGCTAATCCATGCAAGAGCAATTCAAAGCTCAGA
AGCATTGAGTGGTCTGTCCCAGATTACCCAGTCACTAATAAAATCCAGCA
CAAGGCTGGGAGGCAGCTCAGGGGTTTAGAGACCAGGCTGCTCTTGCAGA
AGACCTAAGTTTGGTTCCCAGCACCCCGGTGGTAGCTCACAACCATCCAG
AACTTCAGATCTAGGAGATCTAACTTCCTCTTCCGGCCTCTGTGGGCAGC
ACGTACCTGTGTGATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_c20.b1 MSMg01no184_c20.b1 CHROMAT_FILE:
MSMg01no184_c20.b1 PHD_FILE: MSMg01no184_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:26 2005
         (305 letters)



>mm_chr5_33174847_33175551
          Length = 705

 Score =  536 bits (277), Expect = e-157
 Identities = 295/301 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgctctaaaccactgagccatctcaccagcccaagatagatttatgtatgta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgctctcaaccactgagccatctcaccagcccaagatagatttatgtatgta 264

                                                                       
Query: 65  tgtatgttatgtatgtatgtatacatacctacctatcacaataaactgtcattacaacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtatgttatgtatgtatgtatacatacctacctatcacaataaactgtcattacaacag 324

                                                                       
Query: 125 ttattattcgatgatcatcttattacctgaaaatagatataaataaaatagctctttgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 ttattattcgatgatcatcttattacctgaaaatagatataaataaactagctctttgaa 384

                                                                       
Query: 185 atggttctaaatccaatgagttgtaacaactggctttctgtaagactgggctgatcactc 244
           ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 385 atggttctaaagccaatgagttgtaacaactggctttctgtacgactgggctgaccactc 444

                                                                       
Query: 245 ctgaagctgagtaacaggaacatgcaagctcagtttactcgattcacttctgagttagta 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcagctgagtaacaggaacatgcaagctcagtttactcgattcacttctgagttagta 504

            
Query: 305 t 305
           |
Sbjct: 505 t 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_c20.g1 MSMg01no184_c20.g1 CHROMAT_FILE:
MSMg01no184_c20.g1 PHD_FILE: MSMg01no184_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:26 2005
         (282 letters)



>mm_chr5_33327247_33327928
          Length = 682

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgcatgtgtgcttggtgatagcagtgggaggtgcaggtggggagatggtgtgagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atctgcatgtgtgcttggtgatagcagtgggaggtgcaggtggggagatggtgtgagtaa 422

                                                                       
Query: 61  aaggcacattggggtggtctgctgtgacagaccttttctgacagaaggaagggctctaac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggcacattggggtggtctgctctgacagaccttttctgacagaaggaagggctctaac 362

                                                                       
Query: 121 ctgagatacagccctggagacacacacagggagcctgggacttacaaagcctgctgcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgagatacagccctggagacacacacagggagcctgggacttacaaagcctgctgcaac 302

                                                                       
Query: 181 tttgcacaagaggacaccgcttcctgtttcgcttttgatggtctttctagggactcgcat 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 301 tttgcacaagaggacaccgcttcctgttttgcttttgatggtctttctagggactagcat 242

                                                    
Query: 241 gcaaaatgctctcctcaaattcaagcaagcactgcaggtgg 281
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 gcaaaaagctctcctcaaattcaagcaagcactgcaggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)