BAC Information

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BAC

Clone NameMSMg01-184G09
Chromosome5 (Build37)
Map Location 70,671,317 - 70,671,431
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2, LOC635092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184G09.T7 (MSMg01no184_g09.b1)MSMg01-184G09.TJ (MSMg01no184_g09.g1)
ACCAG376693AG376694
length1,216814
length of high quality
(start - end)
---116 (133 - 248)
definitionCHROMAT_FILE: MSMg01no184_g09.b1 PHD_FILE: MSMg01no184_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:45 2005CHROMAT_FILE: MSMg01no184_g09.g1 PHD_FILE: MSMg01no184_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGACTTTCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCCTGTTCATAGCTGTACACTGGGATGATCCTACTATATGCGTGACGAGC
ATTTATCCTACAATATCTGGACTCCCGCATTCTCTGTTTACTTCCAAGTC
ATCTGTGATGTACTGACGACGTATTATGTATCCTGAATGTTACCTGTCAG
ATCTAATGATGAAATATCTTGCTGTTTGAAAGAGGCAGCCCATCTGTGAG
ATATTACCCTCAGAATTTTCTAACGTGAGTTTGGAATCATCCTCTGATCT
GTTACTTATCTTCCTCATAATATCCTGTCTACATGTTTATGATATCTTGA
CAAAGAATATATATGATGATCGTCATGGGAACTTTCTTTTTCACATGATT
GATTTCTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TATTTTTTTCTCCCCCCCCCCCCGCTTGAGCTGGTATCTTTAAAAAAAGA
GGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TTCTTCATATTTCATTTTAATATTTCTACTTTTTTATCAACATGGTTCTT
CTTTATTCCCTTTTGTTCTCTTTTCTTTTCTATTCTTTTTTCTTTTTTTT
TTTTTTTTTTTTTCTATATTTCTCTTTTCTCTTTTTTTTATTTTTTTTTC
TCATTTTCTTCTCTTTTCTTCTCTTTTTTTTTTTCTATTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTCTTATTATCTTCCCTTTTCTTTTTTTTTCTTT
TATTTTTTTTTTTTATTTTTTTTCTTTTTTGTTTTTATTTTTTTTTTTAT
TTTTTTCTTTCTTCTTTTTCTTTTCGTCTTTTCTTATCTTTTTTTTTTTC
GCTTCTTTTCTCTTTT
NNNNNTTTTNNNCCCTTTTNTTTTNTCTACCCTTATTTTTTTTTCTTTTA
TCTTATCTAATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGGACAGCCGTCTTT
CTTCCTCTTCCTAGTCCATAGCACTACTCTCGCAATATACTTTTGCTGGT
TTTTTTCTCTTGCTTTTGTGTTATATTAACTATCAATCTCCCTAAACACT
GCCGTTGGAACTCAAATGGAAAACATTTTGATGTGTTATGCGCTTCTAAC
AAAAAACTGGAACCTGTATCATAGGAACTTGCTATCAACTAACCTGTAAG
TCCTACTTGTCTTAAAAATGTTTTCCATAAGCATTGCTGATGACTTTCTT
TTGTATGTATTTTTTTTTCCCCCCCCCCCCCACTCCAAACAGGCATTTTT
ATCCTACCATTACATCACCACCAAAATAGAAACTTTCTGGCTTTTATTTT
CTCATGAATAAAACTGATATTAATTACTAATATTTCACATTTATTATTTT
TGCAGTTTGCTGATCCGTCCCCATTCATTATGTCCTCTTGCCCTCAATGC
ACCCCCCCTATTTTTACTCATTTCCCTTTTTATCACATAATTATATCTTA
CAACCCCGCACCACTTGCTAACTTCTGTTACACATAAAATTTCACTCCTG
TTTGTCATCGTTGTTTCCATAATAATTTCCCCCTACTTCTTCAAATTTTA
CTTTAAACATCTCTCTCTGCCATCTTCCGTGTCCTATAACTTTGTAACCT
TCCCTCCCTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_g09.g1 MSMg01no184_g09.g1 CHROMAT_FILE:
MSMg01no184_g09.g1 PHD_FILE: MSMg01no184_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:45 2005
         (116 letters)



>mm_chr5_70671117_70671631
          Length = 515

 Score =  178 bits (92), Expect = 9e-50
 Identities = 110/116 (94%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactggacagccgtctttcttcctcttcctagtccatagcactactctcgcaatatactt 60
           |||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 315 tactgggcag-cgtctttcttcctcttcctagtccacagcactactctcgtaatatactt 257

                                                                   
Query: 61  ttgctggtttttttctcttgcttttgtgttatattaactatcaatctccctaaaca 116
           ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 256 ttggtggtttttttctcttgtttttgtgttatattaactatcaatctccctaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 515
Length adjustment: 8
Effective length of query: 108
Effective length of database: 507
Effective search space:    54756
Effective search space used:    54756
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)