BAC Information

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BAC

Clone NameMSMg01-184I02
Chromosome5 (Build37)
Map Location 118,804,828 - 118,805,154
singlet/doubletsinglet
Overlap genenone
Upstream geneWsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
Downstream geneLOC665162, Thrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184I02.T7 (MSMg01no184_i02.b1)MSMg01-184I02.TJ (MSMg01no184_i02.g1)
ACCAG376770AG376771
length732724
length of high quality
(start - end)
314 (60 - 373)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no184_i02.b1 PHD_FILE: MSMg01no184_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:54 2005CHROMAT_FILE: MSMg01no184_i02.g1 PHD_FILE: MSMg01no184_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTNNNNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTCAGAACAATTGCAGGGAATCTCTTTATCT
TGATGGAATTAGGCTGCTTAATAAACTAGCCGGGAGCTACCTTGGACTCC
CTCTGGAAACACACTCCACCACATTTTCTTCCTGGCACTCAACAGGCAGG
AGAGAAATAGATTGTTTTTTTTTTTTTTTCCTTCGGGTGCTGCCCCTGAG
ACACAGGTTCAAGCTTGCCCTTCACTACCAAGCCAGCTTAATTCTCTGGA
ACTCTTCCTTGAACGTCAGCAGCCCGAGGGCTTTGTGCTCAAAGAGCAAG
CTCTCAACTGGCATTTCAGGCCATATGATAACACCCCGCCCGCCTCCTGT
GCCCCTACAGGGGGATTACTGTGAAGGTCTGCTGGCAGAAAAAAAAACAT
GCCTGGGGAGAGAGAATCAAAAGGTCTAAAGGTTTGATAGCAGAAAGCTA
GCCAGGGCTCTGAGTTCAAACCCCACCCTACTTAAAGCTGTTGAGTTCTG
CCCATAGCTTCTACAGTCCCACCCTTGGTCTCCTTTCTTCTGGAAAAAGC
AACTTCATGTAAGGACCTCTTGCCTTCCTCTGGCCAAGAGGTAAACGCAC
AAATTTTGACCATGCCAGAAGAGGTTCTCTCAGAATTTAAGACTCCGGAG
CCTTGGGGCAAATCCATCAAGGCATCTGGAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGCCCAGGCTAGCCTCG
GACTCAGAGATCTGCCTGCCTCTGCCTCCTGAGTTCTGGGGTTAAAGGTA
TGAGACACCACTGCCCAGCTCACTGGCCCTGATTTTGAACTAAAAGAGAA
GTTGAACTGACCTTTCTTGTCCATAGCTCCCAGATGCCAGTATCACAGGT
GTGCCGGGCTGGAGAGCAAGCCCATGACTTTCTGCATACCAGGCAAGGAC
TTTTCCAAACGAGCTACATTTCCAACCTGTAAACCAGGCTAGTAGCATTG
GGTGTCATTGTTTGACCGGACATCTGACCTGCGGGTCGACTTTAGAGTGT
CATCCTCTGTCATCTCCCCATCATATTTGTCGCTGATGTAAACAAGGTTT
GACGACAAAAAGTAGTCAAAGGTAGAAGAATCGTACGCAGGTGGTTCTCC
TTTGTTGGGACCAAATCCAAGCTACGCTTGGTTTGCCCTAATCCCAAAAA
AATTTATTCCCCACAGCTTGCCAATTTTTTCGAACACCCCCTAGTTTTCG
GGATTTGCCCCCAAGGCCCAGATTTTTTTTTCTTTTACCCCCACCTCGTT
TATTACCATTATTTCTAATACCTGTGTTTTCTTTGTGTCCCAAACATTCC
CCATATAGAGATCATTCCCGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_i02.b1 MSMg01no184_i02.b1 CHROMAT_FILE:
MSMg01no184_i02.b1 PHD_FILE: MSMg01no184_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:54 2005
         (314 letters)



>mm_chr5_118804641_118805354
          Length = 714

 Score =  547 bits (283), Expect = e-160
 Identities = 309/327 (94%), Gaps = 16/327 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagaacaattgcagggaatctctttatcttgatggaattaggctgcttaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggaattcttcagaacaattgcagggaatctctttatcttgatggaattaggctgcttaat 247

                                                                       
Query: 64  aaactagccgggagctaccttggactccctctggaaacacactccaccacattttcttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaactagccgggagctaccttggactccctctggaaacacactccaccacattttcttcc 307

                                                                       
Query: 124 tggcactcaacaggcaggagagaaatagattgtt-tttttttt---------------tt 167
           |||||||||||||||||||||||||||||||||| ||||||||               ||
Sbjct: 308 tggcactcaacaggcaggagagaaatagattgttgttttttttgttttgttttttgtttt 367

                                                                       
Query: 168 tttccttcgggtgctgcccctgagacacaggttcaagcttgcccttcactaccaagccag 227
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttccttcctgtgctgcccctgagacacaggttcaagcttgcccttcactaccaagccag 427

                                                                       
Query: 228 cttaattctctggaactcttccttgaacgtcagcagcccgagggctttgtgctcaaagag 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttaattctctggaactcttccttgaacgtcagcagcccgagggctttgtgctcaaagag 487

                                      
Query: 288 caagctctcaactggcatttcaggcca 314
           |||||||||||||||||||||||||||
Sbjct: 488 caagctctcaactggcatttcaggcca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)