BAC Information

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BAC

Clone NameMSMg01-184I10
Chromosome5 (Build37)
Map Location 107,326,649 - 107,326,946
singlet/doubletsinglet
Overlap geneHfm1
Upstream geneZfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922
Downstream geneCdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184I10.T7 (MSMg01no184_i10.b1)MSMg01-184I10.TJ (MSMg01no184_i10.g1)
ACCAG376786AG376787
length733887
length of high quality
(start - end)
303 (61 - 363)66 (83 - 148)
definitionCHROMAT_FILE: MSMg01no184_i10.b1 PHD_FILE: MSMg01no184_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:56 2005CHROMAT_FILE: MSMg01no184_i10.g1 PHD_FILE: MSMg01no184_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTTTGTGCTTTAAGAGGTTTATTTGCATAGA
CTCTGTGTTTCCTTACTCTGCGTCTTCTCTGTGCTCTTAGCTGAACTTAT
CCCTGAGAGACTGAGATATACAGGCTGTGGGCTCCCTTAGAGCCAGGACA
CATACCACCCCACCCTTCACTCTCTACCACCCTCTTCTGCCCACAGTACA
GTTGTCGGTTTCATACGATCAAAATTCTTTCATAAATTCCTCCTCTCCTT
AAGTGTGTTTGTTTGTTTGTTTTTGTGTTTTACATAAAGGAAATGTCCTT
ATGAATATATGTCGATTTTTTTTTCACCCCCCCCCCCCACCAAAAAAGTT
ATGCCTATCACTTACTAATGACGCCCCACAGAAAAAAAAGCTGCTCTTCT
TTCCATCACTGTGACACTAGGGACTGAGGAAGGGCCCTGCGCATTGAAGG
CACGCGCTTCACTGCTGACCTTCTCCCCAGCCCCATCTTTGCTTCTGTTT
CTTAGCACCGTTACAGGTTGAACCTCTGTCATTCTGCCTCCTTCTCTGTC
ATCTAAATATGTGTGTCACCCAGGTTGTCTTTGAAACTTCCTATTTTCTT
ACCTATATTTTTTTGCCAACCCTGTGGATCGGTATCTTTTGACCCTCCTG
CTCATAACATCCGGTTTTCCATTGCCTGTCTCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGAATCTTCTGGCTT
CACACACACACACACACACACACACACACACACACACTCACACACACTCT
CTTGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAAAGAGAGAGAG
AATTTGAGAGACCTTCTCGCCCCTTTTCCCTTTTTATTTCCCCCTTTTTT
TCCCCCTTCCTTTTTCTTTACTTTAATCTTTTTTTTTTTTTGCCCCTTTC
CTTCTCTTTCTTCCCCTTCTAACTCATCTCTTTTTTTTTCCTTCTCCCAT
CCTGCCCCCCCACCACCACAAAATATTTTTTTTTTTTTTCCCCCCCCCCC
CCCCCCCCCTGGTTTTTTTGTTGTTTATTTTTTTTTCTCTGCCTTCCCCC
CCCCCCAAAATAAAATATTATTTTCTTCTCCTTTTGTTGGGGGCCCCCCC
TTCCCACTACACCTTTTTCTTCTTTTCTTTCCCCCATCTAATTATTTACT
TGTAAACATATCTTTCTCCCCCCTTCCTTTTTTCCCTCTTCTTTCTATAT
TCCTCCCCCCCACAATTACTATCTTTTCTTCCCTTTCTCTTTTTTTTTCT
CTCCCCCTCCTATTCTTACCATGTTTTCTCTTGTCTGCCCTATTAACATA
TTCTTTCTTTTTTTTCCCCTGATCTCCCCGTTTTCTTCCTTCCTTTCCTC
CTTCTAAAGCCCTCCTCTCATATTTCTCTTATTCTCTATCTCCGCCCTCG
CCCTCTATCACCCCCCTTTTATCTCTCACTCCTTTCCTTTCCTCTTCTAC
GCCCCCATATCTCCCATCGCCTATTTATCTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_i10.b1 MSMg01no184_i10.b1 CHROMAT_FILE:
MSMg01no184_i10.b1 PHD_FILE: MSMg01no184_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:56 2005
         (303 letters)



>mm_chr5_107326446_107327148
          Length = 703

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtgctttaagaggtttatttgcatagactctgtgtttccttactctgcgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattctttgtgctttaagaggtttatttgcatagactctgtgtttccttactctgcgt 442

                                                                       
Query: 64  cttctctgtgctcttagctgaacttatccctgagagactgagatatacaggctgtgggct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctctgtgctcttagctgaacttatccctgagagactgagatatacaggctgtgggct 382

                                                                       
Query: 124 cccttagagccaggacacataccaccccacccttcactctctaccaccctcttctgccca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttagagccaggacacataccaccccacccttcactctctaccaccctcttctgccca 322

                                                                       
Query: 184 cagtacagttgtcggtttcatacgatcaaaattctttcataaattcctcctctccttaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtacagttgtcggtttcatacgatcaaaattctttcataaattcctcctctccttaag 262

                                                                     
Query: 244 tgtgtttgtttgtttgtttttgtgttttacataaaggaaatgtccttatgaatatatg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtttgtttgtttgtttttgtgttttacataaaggaaatgtccttatgaatatatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)