BAC Information

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BAC

Clone NameMSMg01-184J11
Chromosome5 (Build37)
Map Location 116,208,571 - 116,208,879
singlet/doubletsinglet
Overlap genenone
Upstream geneGit2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184J11.T7 (MSMg01no184_j11.b1)MSMg01-184J11.TJ (MSMg01no184_j11.g1)
ACCAG376830AG376831
length725810
length of high quality
(start - end)
316 (57 - 372)100 (75 - 174)
definitionCHROMAT_FILE: MSMg01no184_j11.b1 PHD_FILE: MSMg01no184_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:01 2005CHROMAT_FILE: MSMg01no184_j11.g1 PHD_FILE: MSMg01no184_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCGGAACAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTAAGTTTTAAGTTGACTTTGATCGCTTCTCTGT
TGCAGCCAGCTACCTGTGGCGAGGAGACCTCAAGAGAACAGACGCCAATT
TTAACTTCTGGCTTGAGTCATGCTGATAAGGTTTAGCATAGAAACAGAAG
AACTAAGCCCCGAAGCTTCTCTGTGTTTCTTCTAATTTATAGGTCTCCGA
CAAGGAGACCGAGCCGATTTTAAAAATTCATAAGGAATGCGCTTTTCAGT
GTTCTGTTTGAAATCTCAGGTATTGCTCAGTCTGAGCCTCCTAGCCAGCC
AACAAAATGGTGCTCTTGTGTTTTTTTTCTCTCACCACCCTGAACTCCCT
TCCCCTACCAGCTGCTGAGTCTCCCCCCCACTTGCTGACCCCTTGTCTTC
CCCCTCACTTCCACAAAACACCCTCAAGGGCTTCAGGGGGGGTCCGTGGA
TTTGTTGGCTCCCTGCCAATCTCACCGCCCATTTCTTGCGCGCACCAGAC
TCGGCCAGCCAGAACGACGCTGCAACAGGATCCTTCTGCACATGTTTATT
GGGAGAGCTTGATTGCCAAGGCGGAAAGACCCCCCCCCCCCAGCCCATAA
CTGGCGCTGCTTTTATAGGTCTCAGTCAGGTTTGTCTCCCACCCGGCTTG
GCTATGATCCTTGCCCTCCTTTGTT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCCTACAGCTCAGTGGCTCTTCCC
CAGGATACATTTGGTGATATTTAGGACACACTTTATAATCTTAGTATTTA
GGTGGGGTAGAAGGAGAGTGGNNNNNNCCNNNNNNNNNNNANNTNNNTAN
NCCNNTTNNNNNNCCNCCCCGCCCCCCCCGATCCCCGCCTCGTTCCTTTT
TTCCTCCCCGCTCTTTTCCCCCCTTCCCTTCCTTTCTCTTTCCCTCCCTC
CTTTTCCCCCCCTTTTTTTTTCCTCCCCCCCCTACTTCCCTTTTGTCCAC
CGTTTTTTTTTTTCCCCCCCCCCCCCCCCCCTAATTTTTTATTTTTTTTT
GTTGTGGGGGTTTTTTTACCCCCCCCCCTTAAAAAAAATTTTATTTTTTT
TTGGTTTTGTTCGCTTCCTCTTTTTACCCATCTTTCCCCCCCCTTTCTTG
CGTCTTTTTTTCCTCCTTTTCCTTTTTCTCCTCTTTTTCTCTTTGTTCCC
GTTTCTTTGTCGCCTTCAGTCACCTCTTTCTCTTACTGCCCCCCACTTTC
CTACTCTCCGTGTTTTTTTTTTTCTTCTTCCTTTTTTCTACTCTCCCTTT
TTCTGTGCCTTTCTTTTTCTTGTCTTCCGTTCCCTTCTCTTTGTCTCCCT
CTCCTTTCCTCTCTTTTCTTTCTCCTCTCTTTGTGTTTCTTTTTCTCCTT
GCCTTACTCTCTCCTCTTTTTTTTGCACCTTCCTCTTTTTTTTTTCCTTC
TCTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_j11.b1 MSMg01no184_j11.b1 CHROMAT_FILE:
MSMg01no184_j11.b1 PHD_FILE: MSMg01no184_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:01 2005
         (316 letters)



>mm_chr5_116208367_116209083
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaagttttaagttgactttgatcgcttctctgttgcagccagctacctgtggc 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagttttaagttgactttgattgcttctctgttgcagccagctacctgtggc 264

                                                                       
Query: 65  gaggagacctcaagag-aacagacgccaattttaacttctggcttgagtcatgctgataa 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggagacctcaagaggaacagacgccaattttaacttctggcttgagtcatgctgataa 324

                                                                       
Query: 124 ggtttagcatagaaacagaagaactaagccccgaagcttctctgtgtttcttctaattta 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 ggtttagcatagaaacagaagaactaaaccccgaagcttctctgtgtttcttctaattta 384

                                                                       
Query: 184 taggtctccgacaaggagaccgagccgattttaaaaattcataaggaatgcgcttttcag 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 taggtctccgacaaggagaccgagctgattttaaaaattcataaggaatgcgcttttcag 444

                                                                       
Query: 244 tgttctgtttgaaatctcaggtattgctcagtctgagcctcctagccagccaacaaaatg 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 tgttctgtttgaaatctcaggtattgctcaatctgagcctcctagccagccaacaaaatg 504

                    
Query: 304 gtgctcttg 312
           |||||||||
Sbjct: 505 gtgctcttg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)