BAC Information

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BAC

Clone NameMSMg01-184K19
Chromosome5 (Build37)
Map Location 77,330,058 - 77,330,292
singlet/doubletsinglet
Overlap geneA230062G08Rik
Upstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik
Downstream genePpat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184K19.T7 (MSMg01no184_k19.b1)MSMg01-184K19.TJ (MSMg01no184_k19.g1)
ACCAG376889AG376890
length1,225687
length of high quality
(start - end)
---235 (77 - 311)
definitionCHROMAT_FILE: MSMg01no184_k19.b1 PHD_FILE: MSMg01no184_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:09 2005CHROMAT_FILE: MSMg01no184_k19.g1 PHD_FILE: MSMg01no184_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCACTGCCTCTAACTCCTATATAGGGAGAGCCCCGCGTACTTCCT
CCTCGTACTCTGCGATTTCCTAAATATCTGCCACTCTCTCTATCGACTTG
AACCAAACTCTTTCCATTCCATGATAAAAAAAATTTTTGTCATTCCTTCT
CCCCTGGTGAACTTTTTGCCCCGTAGCTATTCCGCGCCTCTAGAGGTGCC
CAAGAATTCGATAGTTGGCCTAGACTGGCATGTAAAGTCTTAGCACTCAT
TAGTATGCGTGCGCTCGCTACCACCTTTCCGATCATCCCAACTTTCCCTC
CGAACTGATCAATGATTCGCACAGCGCCACATGAAGTTTGACATACTTCA
TACTCTACCTCGCTGATCAACACTACAGTAGTCGCAGCAGCACACATCTT
CACCCTACTATTAGACAGCTTAAAATGTAACAGGCTGTGCATGCCTTTAT
TTCCTCCCCCCCGCAGGTAGAGGTAGGCGGTTTTCTAAAAAAGAGGCCAG
CCTGGTCTACAGAGTGAGTTCCAGCACAGCCAGGACTACACTGAGAAACC
CTGTCTCGAATAAAAACAATCCAAAACATCACAACTTAACAAGAAAGAAA
GAAAGACAGAAAGAAAGAAAGAAAGACAGAAAGAACGAAAGATAGAAAGG
AAGCGAAGGAAGGAAGGATGGAAGGAAGGAAGGAAGGAAGTTAAGTAACA
GACTATCTACCTTTCTTTTTTTTTAACTCTTCCTCTTAATTCTTTCTTAT
ATTTTCCTCTTTTCCTTTATAATCATTTTTTCCCTTTTTTTTTTTATTTA
ATTTATCCCTCTTTTCTATCATTTCTTTTTTTCCTTTTCTTTTAACTTTC
TCTCTTTTTTCCTTTCTTTTTTAATTCTTTTTTTTCTCTATTTATATTCT
TCCCTTTATTATCTTATTTATTATTATTTTTATTTTTCATTTTATTCTTC
TTATTTTTTTCTTTTTTTCCTTTTTTTTCTTCTTCTTTTACTATTATTAT
TTTATATATTTTCTTTTTTCTTTTTAAATTTATTTTATTTTCTTTTATAT
TTTTTTTTCTTTTATTTCTCCTTTTTTTTCTCTTATTATTTTTTTTTTTG
TATTCTTTATTTTCTATTTATTTATTCTCTTTCTACACTTTTCTCTTTTT
ACTTATATTTTCTTTTGTTTCTTTCCTGTTTTTTCCTATCCTCTATATTT
TATATTTTATATTTTTTTTGTTTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGTCAAGACAGATGCAAGAAC
TCTTAAATTGAAGTCAGTCAATAACTCTGTCTGCCTGCCCCCCTCCCTCC
CCACGTCATACAACCCCCCCCCCCCCCGCCATGCACTTAAACACCCAGAC
TTACACTAAGCTGCTGTTTTTCAACGAGAACATACTTTAGGTCACATTTT
TTCATAAAGTAAGTTGATAAGGACGGTGGGGAGTCTGGATCAATGGGCGC
ATACGCTGCGGTTATCTGAAAAATCCTGCAAAGCGAGTACAAGGTTAGGA
TTTGTCTACCCCGNNTCATGCCCACTTGATGTCTCTATGAGCTTCGCTTG
TTCATTAAAACAACAAAAAAAAAAAGGCTGAGCCTTGGTTGTAGCTATTT
TATCTTGTGCCCAATGACTACCTAGGGTACTGTAAAAATTCTATTTTCAC
TTCTTATCCCACCCAGCATGGGGATGCAGCTCAATTGTACAGTTTGTTTA
ACATGTTCAAGGTTTCAGCACTCATTATTGAAAAAAAAAAAGAGCTCTTA
TCACTTAATATACACAAAGATAACATTTTTAACAGAGTTAACAAGCTCTG
TAATGAACCCTCAATGCCATGTTAGGTAATCCGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_k19.g1 MSMg01no184_k19.g1 CHROMAT_FILE:
MSMg01no184_k19.g1 PHD_FILE: MSMg01no184_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:09 2005
         (235 letters)



>mm_chr5_77329858_77330492
          Length = 635

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%), Gaps = 2/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtcaagacagatgcaagaactcttaaattgaagtcagtcaataactctgtctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagtcaagacagatgcaagaactcttaaattgaagtcagtcaataactctgtctgcct 260

                                                                       
Query: 61  g-cccccctccctccccacgtcatacaaccccccccccccccgccatgcacttaaacacc 119
           | ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct: 261 gccccccctccctccccacgtcatacaa-acccccgccccccgccatgcacttaaacacc 319

                                                                       
Query: 120 cagacttacactaagctgctgtttttcaacgagaacatactttaggtcacattttttcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagacttacactaagctgctgtttttcaacgagaacatactttaggtcacattttttcat 379

                                                                   
Query: 180 aaagtaagttgataaggacggtggggagtctggatcaatgggcgcatacgctgcgg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaagtaagttgataaggacggtggggagtctggatcaatgggcgcatacgctgcgg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)