BAC Information

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BAC

Clone NameMSMg01-184O02
Chromosome5 (Build37)
Map Location 79,304,317 - 79,304,631
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184O02.T7 (MSMg01no184_o02.b1)MSMg01-184O02.TJ (MSMg01no184_o02.g1)
ACCAG377033AG377034
length734862
length of high quality
(start - end)
318 (60 - 377)125 (75 - 199)
definitionCHROMAT_FILE: MSMg01no184_o02.b1 PHD_FILE: MSMg01no184_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:26 2005CHROMAT_FILE: MSMg01no184_o02.g1 PHD_FILE: MSMg01no184_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTTTTNNNCGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCAAATATATAGAACAGAATTTCCACATCAGA
AACATGCCAAATTATTGTTTTAGTTGAAATGGAAGTAACACGTGTGAGAA
TGAGAAGACTTAAGGAGAGGGATAAGCAGCAATAAGCTGATAAACAGTTT
CACCATTTAAGGCATGAACTTTGACTCATATAATAAGAACTAGGGAGCTG
AAATGTAAATATTACCAATAGATATTTTTGGCAAAATTTCATTATTATGA
AAGAATGTTTTCTGGCTGTTGTATGAAAAAAATCAGGTAGAGAGCAAAAA
TGTTCAATGAAGTATGTTATGACTATGTTTATGACCCACTCTCTTTGGTA
TGTATTTAGCTTCTCTAGAGTTCTAACTATATTTTTAGCTACCTGAAGTG
TCCAATAATATCTTAATTAGAGACACAAAGTATGATGCCAGCTAATGATT
GAGATGTATAGAGAAAGTAATAAGGCTTGAGTCTCAGGTTCATCCTTTTG
AAGAATTAGATAGGCCAGGGATCATTGAAAAATAGCTGTCAGATAGAACC
ATAGTTCTTAATTTTTTACTTACTCCTTATCACTATTCATGAAAGAAATA
TTACAATAATCCTGTGCGAGTTAGAAATGTTCTCAGACTTTTAGAAGAGG
TTGTTCTTGCCTATGAATACATAGGGCATTAATA
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGGCTCAACAAGCTTAAGTGCCC
AAGCAAGGATGAGGATGCCTCAATCCCACTTGGGAGAGAGAAGAAAGCAA
TCACAAGTGTGGAGAGAGTGGGGGACTTGGGAGGGGATGTAGATGTTCTG
TCCTCCCCCCCCCTTTTTCTCCTTTTCTTTCCCCTTTTTTTCCCCCTCTT
TTTTTTTCAATTTCTTTTTTATTTTTTTCCCTCTTTCTTTTTTTCTTTCC
CCCTCCACCTCTCCTCTTTTTTTTTTTTTTTTCTCCCTACTCAGCGAACC
TTATTCTTTGTTTTTTTCTTTTTTTTTTTCCCCCCCCCCCCCCCTCCCTT
TTTTGTTTTTCTATCTCGTTTCCGTCTTCATTTTTTTTTCCCCCCCCCTC
AATTACTTTTATTATTTTTTTTTTTTTTTCGCTCCCCTTCCTTCTATTTC
TTCTTTTTCACCTCTTCTTGCAAATCATAATACTTGTATACATTCTATTA
TCTCTTTCTCCCCTACGTTTTACCCACCTTTAATTCTTTCCGTGCACTCC
TTATTTCTATCTTATTTCCACTCATCTCTTTTTGTTCCCCCTCCCCCCTT
CTTTTCTCTTTTTTCTTCTGTCCCCTATTGCTTTTGCTAACTTCTTCTCC
TCTGTCCTCCTCACTTTCTTTCTTTCTTCCCTTCCTTCTAACATTCCACT
TCCCCATTTGTTTTTTTCCTTTCTTCTCCCTCCCCCCTTTTCTTTCCCCT
CTCTCATCCCCCCCCTCCTTTCTATGTTCTCTCTCTTTCTTCTTTTCCTT
ATTTCACTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_o02.b1 MSMg01no184_o02.b1 CHROMAT_FILE:
MSMg01no184_o02.b1 PHD_FILE: MSMg01no184_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:26 2005
         (318 letters)



>mm_chr5_79304114_79304831
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaatatatagaacagaatttccacatcagaaacatgccaaattattgtttta 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaaatatctagaacagaatttccacatcagaaacatgccaaattattgtttta 263

                                                                       
Query: 64  gttgaaatggaagtaacacgtgtgagaatgagaagacttaaggagagggataagcagcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgaaatggaagtaacacgtgtgagaatgagaagacttaaggagagggataagcagcaa 323

                                                                       
Query: 124 taagctgataaacagtttcaccatttaaggcatgaactttgactcatataataagaacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagctgataaacagtttcaccatttaaggcatgaactttgactcatataataagaacta 383

                                                                       
Query: 184 gggagctgaaatgtaaatattaccaatagatatttttggcaaaatttcattattatgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 gggagctgaaatgtaaatattaccaatagatatttttggcaaattttcattattatgaaa 443

                                                                       
Query: 244 gaatgttttctggctgttgtatgaaaaaaatcaggtagagagcaaaaatgttcaatgaag 303
           |||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 gaatgaaatctggctgttgtatgaaaaaaatcaggtagagaacaaaaatgttcaatgaag 503

                          
Query: 304 tatgttatgactatg 318
           |||||||||||||||
Sbjct: 504 tatgttatgactatg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)